View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_20 (Length: 363)
Name: NF18364_high_20
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_20 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 4647841 - 4647497
Alignment:
| Q |
19 |
gtattgccttggaatcttagagttgaatgtgctactcttcaaactctcatgttcaattcccaattcttccaagtaaaaatttagttacactcaatataaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647841 |
gtattgccttggaatcttagagttgaatgtgctactcttcaaactctcatgttcaaatcccaattcttccaagtaaaaatttagttacactcaatataaa |
4647742 |
T |
|
| Q |
119 |
ctgagaaagtaaaggcaatgtgtcaaattagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647741 |
ctgagaaagtaaaggcaatgtgtcaaattagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatcta |
4647642 |
T |
|
| Q |
219 |
tcctgtccatcaacttattttgaagttgattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaatgcaggtgataca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4647641 |
tcctgtccatcaacttattttgaagttgattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaattcaggtgataca |
4647542 |
T |
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| Q |
319 |
gtttttcatatgtttatagatgatattttggttgaacaatatgct |
363 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
4647541 |
gtttttcatatgtttatagatgatattttggctgaacattatgct |
4647497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 4667039 - 4666917
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
332 |
Q |
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||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||||| ||||||||| || || |
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| T |
4667039 |
attttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttt |
4666940 |
T |
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| Q |
333 |
tatagatgatattttggttgaac |
355 |
Q |
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||||||||||||| ||| ||||| |
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| T |
4666939 |
tatagatgatattatggctgaac |
4666917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 4712075 - 4712195
Alignment:
| Q |
241 |
aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttataga |
338 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||||| |||||||| ||||||||| || ||||| | |
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| T |
4712075 |
aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa |
4712174 |
T |
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| Q |
339 |
tgatattttggttgaacaata |
359 |
Q |
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||||||||||| ||||||||| |
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| T |
4712175 |
tgatattttggctgaacaata |
4712195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 235 - 363
Target Start/End: Original strand, 4846009 - 4846139
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
332 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| | || |||||| |||||||| ||||||||| || || |
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| T |
4846009 |
atttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagatatt |
4846108 |
T |
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| Q |
333 |
tatagatgatattttggttgaacaatatgct |
363 |
Q |
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||| |||||||||||| ||||| ||||||| |
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| T |
4846109 |
tatcaatgatattttggctgaactatatgct |
4846139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 4783831 - 4783952
Alignment:
| Q |
237 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
334 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | | ||||||| | ||||||| || || | |
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| T |
4783831 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4783930 |
T |
|
| Q |
335 |
tagatgatattttggttgaaca |
356 |
Q |
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||||||||| ||||| |||||| |
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| T |
4783931 |
tagatgatagtttggctgaaca |
4783952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 355
Target Start/End: Original strand, 4816260 - 4816380
Alignment:
| Q |
237 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
334 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | | ||||||| | ||||||| || || | |
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| T |
4816260 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4816359 |
T |
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| Q |
335 |
tagatgatattttggttgaac |
355 |
Q |
| |
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||||||||| ||||| ||||| |
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| T |
4816360 |
tagatgatagtttggctgaac |
4816380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 4636956 - 4636837
Alignment:
| Q |
237 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
334 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| ||| ||||| || || | |
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| T |
4636956 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattca |
4636857 |
T |
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| Q |
335 |
tagatgatattttggttgaa |
354 |
Q |
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||||| | | |||||||||| |
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| T |
4636856 |
tagataacactttggttgaa |
4636837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 4643772 - 4643714
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat |
291 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4643772 |
attttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgat |
4643714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 4864023 - 4863965
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
4864023 |
attttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgat |
4863965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 4631028 - 4630971
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga |
290 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
4631028 |
attttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga |
4630971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 4697184 - 4697242
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggtt--acttttgtgagtttgat |
291 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
4697184 |
atttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgat |
4697242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 4672777 - 4672720
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga |
290 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
4672777 |
attttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttga |
4672720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 235 - 355
Target Start/End: Original strand, 18925736 - 18925858
Alignment:
| Q |
235 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
332 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||| || | ||||| ||||||||||| |||||||||||| |||||||| ||||||||| || || |
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| T |
18925736 |
attttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttt |
18925835 |
T |
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| Q |
333 |
tatagatgatattttggttgaac |
355 |
Q |
| |
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||||||||||| ||||| ||||| |
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| T |
18925836 |
tatagatgataatttggctgaac |
18925858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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