View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_24 (Length: 305)
Name: NF18364_high_24
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 12351588 - 12351876
Alignment:
| Q |
1 |
tagttatttagtgtagatctgcacagcttctatttgaacataattgtcaacctcattcttcagtttattgcattttaaacagaatttcttgttgacacag |
100 |
Q |
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| T |
12351588 |
tagttatttagtgtagatctgcacagcttctatttgaacagaattgtcaacctcattcttcagtttattgcattttaaacagaatttcttgttgacacag |
12351687 |
T |
|
| Q |
101 |
tgataggaacccgaattaaacgataaaacaaatagtagtattattgcttgaaatacaaaatattacagaagattgaccgaatcccagagcaaaatgctgc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12351688 |
tgataggaacccgaattaaaagataaaacaaatagtagtattattgcttgaaatacaaaatattacagaagattgaccgaatcccagagcaaaatgctgc |
12351787 |
T |
|
| Q |
201 |
tccttcagagtgctaacaatgcatctctgcccttctaatcttaagtctatatattttcctcaatcattcttataggctatagttgttac |
289 |
Q |
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| T |
12351788 |
tccttcagagtgctaacaatgcatctctgcccttctaatcttaagtctatatattttcctcaatcattcttataggctatagttgttac |
12351876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 25073810 - 25073941
Alignment:
| Q |
101 |
tgataggaacccgaattaaacgataaaacaaatagtagta-ttattgcttgaaatacaaaatattacagaagattgacc----gaatcccagagcaaaat |
195 |
Q |
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| T |
25073810 |
tgataggaagccgaattaaaagataaaacaaagagtagtatttattcattgaaatagaaaatattacagaagattgacccctgtaatcccagagcaaa-- |
25073907 |
T |
|
| Q |
196 |
gctgctccttcagagtgctaacaatgcatctctgcc |
231 |
Q |
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| T |
25073908 |
--tgctacttcagagtgctaacaatgcatctctgcc |
25073941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 50580328 - 50580261
Alignment:
| Q |
180 |
aatcccagagcaaaatgctgctccttcagagtgctaacaatgcatctctgcccttctaa-tcttaagtctat |
250 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||| | |||| |||||||||||| |
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| T |
50580328 |
aatcccagagcaaa----tgctccttcagagtgctaacaatacatctctgccttcctaattcttaagtctat |
50580261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 37323062 - 37323112
Alignment:
| Q |
200 |
ctccttcagagtgctaacaatgcatctctgcccttctaa-tcttaagtcta |
249 |
Q |
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|||||||||||||||||||||||||||||||| | |||| ||||||||||| |
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| T |
37323062 |
ctccttcagagtgctaacaatgcatctctgccttcctaattcttaagtcta |
37323112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 17899995 - 17900028
Alignment:
| Q |
198 |
tgctccttcagagtgctaacaatgcatctctgcc |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
17899995 |
tgctccttcagagtgctaacaatgcatctctgcc |
17900028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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