View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18364_high_27 (Length: 279)
Name: NF18364_high_27
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4384584 - 4384324
Alignment:
| Q |
1 |
tctattctacaaggaattaattaatagatgacataaaaatgaagcatgctatggtaatcaaattcatgatcatcttaaaaacaactaaaagaaaaggaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384584 |
tctattctacaaggaattaattaatagatgacataaaaatgaagcatgccatggtaatcaaattcatgatcatcttaaaaacaactaaaagaaaaggaaa |
4384485 |
T |
|
| Q |
101 |
catttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaacacttaattccaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384484 |
catttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaacacttaattccaag |
4384385 |
T |
|
| Q |
201 |
tgtaataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaatagg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384384 |
tgtaataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaatagg |
4384324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 34689437 - 34689537
Alignment:
| Q |
76 |
taaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagt |
175 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
34689437 |
taaaaacaactaaaagaaaaggaaaaaattatgtcttttggagtcatt----------atgtacaacctatacgacaaaactaatcaagaacttttcagt |
34689526 |
T |
|
| Q |
176 |
tttattaaaaa |
186 |
Q |
| |
|
|||||| |||| |
|
|
| T |
34689527 |
tttattgaaaa |
34689537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 34711849 - 34711949
Alignment:
| Q |
76 |
taaaaacaactaaaagaaaaggaaacatttatgccttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagt |
175 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
34711849 |
taaaaacaactaaaagaaaaggaaaaaattatgtcttttggagtcatt----------atgtacaacctatacgacaaaactaatcaagaacttttcagt |
34711938 |
T |
|
| Q |
176 |
tttattaaaaa |
186 |
Q |
| |
|
|||||| |||| |
|
|
| T |
34711939 |
tttattgaaaa |
34711949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 35546487 - 35546540
Alignment:
| Q |
203 |
taataggagagtacatgtcctaatcatttgctgcactagttgtagtcaatagga |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| || ||||||| |
|
|
| T |
35546487 |
taataggagagtacatgtcctgatcatttgccgcactagttgttgtaaatagga |
35546540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University