View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_29 (Length: 261)
Name: NF18364_high_29
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 35490922 - 35490692
Alignment:
| Q |
14 |
atgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctccc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35490922 |
atgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctccc |
35490823 |
T |
|
| Q |
114 |
agtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatcattctgttactattttcttaagaaaccaaatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
35490822 |
agtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagcgagcaatatataaatcattttgttactattttcttaagaaacaaaatta |
35490723 |
T |
|
| Q |
214 |
gctcaccgaaatttgcaccactcgaagaatc |
244 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
35490722 |
gctcaccgaaatttgcaccactcgaagaatc |
35490692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 35503757 - 35503590
Alignment:
| Q |
14 |
atgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctccc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35503757 |
atgaaccatctttgcttaaagcaacaccattgggaaaagcaaggccacttaataagactttcacttcttttgttgacttatcatatttcattaacctccc |
35503658 |
T |
|
| Q |
114 |
agtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatca |
181 |
Q |
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||||||||| ||||||| ||||| ||| || |||||||| |||||||||| ||||| |||||||||| |
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| T |
35503657 |
agtcttgtctccactaagaagtacaagcataaattgcctgtaaataaaagtaaccaacatataaatca |
35503590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 35512389 - 35512222
Alignment:
| Q |
14 |
atgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctccc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||| | |||||||| ||||||||||||| || |
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| T |
35512389 |
atgaaccatctttgcttaaagcaacaccattgggaaaaaaaaggccacttaataagacctttacttctttactcgacttatcgtatttcattaaccgtcc |
35512290 |
T |
|
| Q |
114 |
agtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatca |
181 |
Q |
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||||||||| ||||||| | || ||| ||| ||||||| | | |||||||||||| ||||| |||| |
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| T |
35512289 |
agtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatca |
35512222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 35497346 - 35497243
Alignment:
| Q |
93 |
atcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatcattctgttacta |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| ||||| ||||||| |||||| |
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| T |
35497346 |
atcatatttcattaaccttccagtcttgtctccactaacaaataaaagcgtatattgcctgcaaataaaagtgaccaacatatagatcattccattacta |
35497247 |
T |
|
| Q |
193 |
tttt |
196 |
Q |
| |
|
|||| |
|
|
| T |
35497246 |
tttt |
35497243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 40161426 - 40161260
Alignment:
| Q |
17 |
aaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagaccttcacttctttggttgacttatcatatttcattaacctcccagt |
116 |
Q |
| |
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|||| |||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
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| T |
40161426 |
aaccgtctttgcttaaacaaacaccattaggataattaaggccacttaataagaccttcacttcttttgttgacttcacatatttcattaaccttccagt |
40161327 |
T |
|
| Q |
117 |
cttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatcatt |
183 |
Q |
| |
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||||| ||||| | ||||||||| | | |||||| ||| |||| ||||||| ||||| |||||| |
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| T |
40161326 |
tttgtctccacttagaagtaaaagcggaatttgcctacaaacaaaaatgaccaacatatagatcatt |
40161260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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