View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_3 (Length: 602)
Name: NF18364_high_3
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 212 - 593
Target Start/End: Complemental strand, 33180898 - 33180513
Alignment:
| Q |
212 |
taattaccaatctgtatagtgcattgtgacacatgcttcctcaatttgctgattatgatgttaattttttgaccaaattgagataagtcctgcccctctt |
311 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33180898 |
taattaccaatctgtatagtgatttgtgacacatgcttcctcaatttgctgattatgatgttaattttttgaccaaattgagataagtcctgcctctctt |
33180799 |
T |
|
| Q |
312 |
ccctgttnnnnnnn-ggttagtaactattattgtattaactaatgtagctaacttagattatgtaaaaggtttcaacaacaacaaca---ttaacaagta |
407 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33180798 |
ccctgttaaaaaaaaggttagtaactattattgtattaactaatgtagctaacttagattatgtaaaaggtttcaacaacaacaacaacattaacaagta |
33180699 |
T |
|
| Q |
408 |
taacaattatagttataataagtaaacttacgaatcagtagtgaggcattcaatctgagtaacaattgcaacaatggtgttgataacccaatatacatca |
507 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180698 |
taacaattatagttataataagtaaacttacgaatcagtagtgaggcattcaatctgagtaacaattgcaacaatggtgttgataacccaatatacatca |
33180599 |
T |
|
| Q |
508 |
actgggaattgctccaaagctggagcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatgatgat |
593 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180598 |
actgggaattgctccaaagctggagcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatgatgat |
33180513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 33139922 - 33139634
Alignment:
| Q |
18 |
catagatgggagcttttggagtgtctttccagaaaatcaacaccttaaacacttccataatttccgtcggggttt---agagcttcctgagtaacttgtt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33139922 |
catagatgggagcttttggagtgtctttccagaaaaccaacaccttaaacacttccataatttccgtcggggtttgaaagagcttcctgagtaacttgtt |
33139823 |
T |
|
| Q |
115 |
atactctgcttcatctgaaaattcaaataatttccttcaatatggggagaaaatacttacatttggggttttgacaaaacaaaaacatataaagcattaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33139822 |
atactctgcttcatctgaaaattcaaataatttccttcaatatggggagaaaatacttacatttggggtt--gacaaaacaaaaacatataaagcattaa |
33139725 |
T |
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| Q |
215 |
ttaccaatctgtatagtgcattgtgacacatgcttcctcaatttgctgattatgatgttaattttttgaccaaattgagataagtcctgcc |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
33139724 |
ttaccaatctgtatagtgcattgtgacacatgcttcctcaatttgctaattatgatgttaatcttttgaccaaaatgagataagtcctgcc |
33139634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 432 - 593
Target Start/End: Complemental strand, 33157859 - 33157698
Alignment:
| Q |
432 |
aacttacgaatcagtagtgaggcattcaatctgagtaacaattgcaacaatggtgttgataacccaatatacatcaactgggaattgctccaaagctgga |
531 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33157859 |
aacttacgaatcagttgtaaggcattcaatctgagtaacaattgcaacaatggtgatgataacccaatagacatcaactgggaattgctccaaagctgga |
33157760 |
T |
|
| Q |
532 |
gcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatgatgat |
593 |
Q |
| |
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||||||||||||||||||||||| || ||||| |||||||| ||||| ||| |||||||||| |
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| T |
33157759 |
gcaagagctggcacttccttgatatcatgacgcgagttgagtctttccaacgcaatgatgat |
33157698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 424 - 593
Target Start/End: Complemental strand, 33139442 - 33139273
Alignment:
| Q |
424 |
aataagtaaacttacgaatcagtagtgaggcattcaatctgagtaacaattgcaacaatggtgttgataacccaatatacatcaactgggaattgctcca |
523 |
Q |
| |
|
||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |
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| T |
33139442 |
aataattaaacttacgaattagtggtgagacattcaaactgagtaacaattgcaacaatggtgatgataacccaatatacatcaacagggaattgttcca |
33139343 |
T |
|
| Q |
524 |
aagctggagcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatgatgat |
593 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||| |
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| T |
33139342 |
aagctggtgcaagggctggaacttccttgatgtcatgacgcgagttgagtctttccaactcaatgatgat |
33139273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 431 - 593
Target Start/End: Original strand, 33289423 - 33289585
Alignment:
| Q |
431 |
aaacttacgaatcagtagtgaggcattcaatctgagtaacaattgcaacaatggtgttgataacccaatatacatcaactgggaattgctccaaagctgg |
530 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | |||||||| ||||||| ||||| ||| | |
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| T |
33289423 |
aaacttacgaatcagtagtgagacattcaatctgagtaacaattgtaacaatggtgatgataacccaaaacacatcaaccgggaattcttccaatgctag |
33289522 |
T |
|
| Q |
531 |
agcaagagctggcacttccttgatgtcgtgacgtgagttgagcctttctaactcaatgatgat |
593 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| |||||||||| ||||| |||||||||||||| |
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| T |
33289523 |
tgcaagagctggcactttcttgatgtcatgaagtgagttgagtctttccaactcaatgatgat |
33289585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 33158245 - 33158092
Alignment:
| Q |
19 |
atagatgggagcttttggagtgtctttccagaaaatcaacaccttaaacacttccataatttccgtcggggttt---agagcttcctgagtaacttgtta |
115 |
Q |
| |
|
||||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||| |||| || |||||||||||||| |
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| T |
33158245 |
atagatgggtgtttgtggagtatctttccagaaaatcagcaccttaaacacttccataatttccgttggagtttgaaagagttttttgagtaacttgtta |
33158146 |
T |
|
| Q |
116 |
tactctgcttcatctgaaaattcaaataatttccttcaatatggggagaaaata |
169 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||||| |||||||| |
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|
| T |
33158145 |
tactcagcttcatctgagaatttaaataatttccttcaatatgggaagaaaata |
33158092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 33181088 - 33180934
Alignment:
| Q |
19 |
atagatgggagcttttggagtgtctttccagaaaatcaacaccttaaacacttccataatttccgtcggggttt---agagcttcctgagtaacttgtta |
115 |
Q |
| |
|
||||||||| | || |||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||| |
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| T |
33181088 |
atagatgggtgtttgtggagtatctttccagaaaatcagcaccttaaacacttccataatttcagttggggtttgaaagagctttttgagtaacttgtta |
33180989 |
T |
|
| Q |
116 |
tactctgcttcatctga-aaattcaaataatttccttcaatatggggagaaaata |
169 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||| |||||| |||||||| |
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|
| T |
33180988 |
tactctgcttcatctgagaatttaaaataatttccttcagtatgggaagaaaata |
33180934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 33158055 - 33157953
Alignment:
| Q |
214 |
attaccaatctgtatagtgcattgtgacacatgcttcctcaatttgctgattatgatgttaattttttgaccaaattgagataagtcctgcccctcttcc |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
33158055 |
attaccaatctgtatagtgatttgtgacacatgcttcctcagtttgctgattatgatgttgattttttggccaaattgagataagtcctgcctctcttcc |
33157956 |
T |
|
| Q |
314 |
ctg |
316 |
Q |
| |
|
||| |
|
|
| T |
33157955 |
ctg |
33157953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 33288620 - 33288744
Alignment:
| Q |
30 |
cttttggagtgtctttccagaaaatcaacaccttaaacacttccataatttccgtcggggttt---agagcttcctgagtaacttgttatactctgcttc |
126 |
Q |
| |
|
||||||||| |||||||| ||||||| ||| |||||||||||||| | ||| |||||||||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
33288620 |
cttttggagcgtctttccgaaaaatcagcactttaaacacttccatgacttcagtcggggtttgaaagagctttttgagtaacttgatatactctgcttc |
33288719 |
T |
|
| Q |
127 |
atctgaaaattcaaataatttcctt |
151 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
33288720 |
atctggtaattcaaataatttcctt |
33288744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 33289211 - 33289293
Alignment:
| Q |
212 |
taattaccaatctgtatagtgcattgtgacacatgcttcctcaatttgctgattatgatgttaattttttgaccaaattgaga |
294 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||| ||| |||||||| ||||||||||| |||| || |||||||||||||| |
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|
| T |
33289211 |
taattaccaatatatatagtgcattgtgccacatggttcgtcaatttgttgattatgatgctaatcttatgaccaaattgaga |
33289293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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