View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_34 (Length: 220)
Name: NF18364_high_34
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35206519 - 35206321
Alignment:
| Q |
1 |
gttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacc |
100 |
Q |
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| T |
35206519 |
gttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacc |
35206420 |
T |
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| Q |
101 |
tcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcacttaaaaca |
199 |
Q |
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| T |
35206419 |
tcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactcatttccactgagctttttcccaacacagcacttaaaaca |
35206321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 43986190 - 43986069
Alignment:
| Q |
29 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
128 |
Q |
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| T |
43986190 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
43986091 |
T |
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| Q |
129 |
acatgacatgtccaaaaacagg |
150 |
Q |
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| T |
43986090 |
acaaaacatgccctaaaacagg |
43986069 |
T |
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