View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_high_5 (Length: 527)
Name: NF18364_high_5
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 183 - 517
Target Start/End: Complemental strand, 16456787 - 16456449
Alignment:
| Q |
183 |
tgtttatggaaattttcaagaaaacttctattt---ctctctctatcacaattaaaatgaaaaattcctcaccaaatatcattccaacatgccacatacg |
279 |
Q |
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| T |
16456787 |
tgttcatggaaattttcaagcaaacttctattttctctctctctatcacaattaaaatgaaaaattccttaccaaatatcattccaacatgccacatacg |
16456688 |
T |
|
| Q |
280 |
acgttaaaattgaaaatgttattcgaacgtaaacgaatcgacaatatttttcaggttttta-ggaggatggcataacattgactataagcttataaaaca |
378 |
Q |
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| T |
16456687 |
acgttaaaattgaaaatgttattcgaatgtaaacgaatcgacaatatttttcaggtttttttggaggctggcttaacattgatcataagcttatataact |
16456588 |
T |
|
| Q |
379 |
tttatttgatttcagttgcaggctccaagaaggcattgttgtgatgtattgccctcaagtgctagtgaccaactggaaatttctgttagagaatgcaaag |
478 |
Q |
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| T |
16456587 |
tttatttgatttcagttgcaggctccaagaaggcattgttgtgatgtattgccctcaagtgctagtgaccaactggaaatttctgttagagaatgcaaag |
16456488 |
T |
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| Q |
479 |
atgaagaattgatttacaagcactgaagtgttgcctatg |
517 |
Q |
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| T |
16456487 |
atgaagaattgatttacaagcactgaagtgttgcctatg |
16456449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 16456952 - 16456866
Alignment:
| Q |
18 |
cttgagtggggtctcctctcccaactcgaactcgagatcttgcttaaggcattggagtccagtttcactctaagtaatgtaacgttg |
104 |
Q |
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| T |
16456952 |
cttgagtggggtctcctctcccaactcgaacttgagatcttgcttaaggcattggagtcgagcttcactctaagtaatgtaacgttg |
16456866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Original strand, 36341315 - 36341354
Alignment:
| Q |
217 |
tctctctatcacaattaaaatgaaaaattcctcaccaaat |
256 |
Q |
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| T |
36341315 |
tctctctatcacaattaaaaagaaaaattcctaaccaaat |
36341354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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