View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_1 (Length: 950)

Name: NF18364_low_1
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_1
NF18364_low_1
[»] chr3 (38 HSPs)
chr3 (237-934)||(26403670-26404371)
chr3 (19-238)||(54619121-54619340)
chr3 (19-238)||(38681011-38681230)
chr3 (33-238)||(21582754-21582960)
chr3 (33-238)||(47467667-47467872)
chr3 (19-239)||(36715941-36716162)
chr3 (19-237)||(3953816-3954033)
chr3 (37-234)||(44708464-44708660)
chr3 (19-239)||(34290553-34290773)
chr3 (19-238)||(8073257-8073474)
chr3 (33-235)||(53149235-53149437)
chr3 (33-238)||(42098784-42098989)
chr3 (19-239)||(43207156-43207374)
chr3 (43-234)||(37168360-37168551)
chr3 (19-238)||(27078486-27078706)
chr3 (19-238)||(27084283-27084503)
chr3 (19-224)||(18372448-18372656)
chr3 (19-238)||(50939152-50939370)
chr3 (19-238)||(53506802-53507021)
chr3 (19-238)||(54407073-54407294)
chr3 (49-238)||(50258542-50258731)
chr3 (58-235)||(36605973-36606149)
chr3 (19-157)||(9878686-9878824)
chr3 (28-232)||(48157117-48157310)
chr3 (25-121)||(29620423-29620519)
chr3 (54-149)||(32319162-32319257)
chr3 (54-157)||(54574826-54574929)
chr3 (59-156)||(49393099-49393195)
chr3 (54-149)||(8420330-8420425)
chr3 (54-156)||(25855426-25855527)
chr3 (71-157)||(26279563-26279649)
chr3 (169-240)||(48720427-48720498)
chr3 (54-156)||(789940-790042)
chr3 (59-149)||(28689368-28689458)
chr3 (92-145)||(23641329-23641382)
chr3 (81-157)||(42453435-42453511)
chr3 (176-238)||(29620364-29620426)
chr3 (54-157)||(52374660-52374763)
[»] chr7 (40 HSPs)
chr7 (19-238)||(29077186-29077404)
chr7 (19-235)||(8171460-8171675)
chr7 (19-238)||(18776683-18776902)
chr7 (33-238)||(12596207-12596409)
chr7 (37-239)||(20091196-20091399)
chr7 (19-239)||(10329326-10329546)
chr7 (19-238)||(23550988-23551207)
chr7 (37-238)||(48983756-48983962)
chr7 (19-238)||(38414793-38415012)
chr7 (33-157)||(10955464-10955588)
chr7 (43-238)||(47984885-47985082)
chr7 (19-238)||(24525599-24525821)
chr7 (19-238)||(19692060-19692279)
chr7 (19-240)||(25010399-25010613)
chr7 (75-238)||(26254015-26254178)
chr7 (58-238)||(28749715-28749895)
chr7 (52-236)||(8239686-8239869)
chr7 (54-157)||(2611260-2611363)
chr7 (57-156)||(9021799-9021898)
chr7 (76-156)||(33162338-33162418)
chr7 (65-156)||(6765680-6765771)
chr7 (54-149)||(36891579-36891674)
chr7 (57-149)||(23859077-23859169)
chr7 (54-157)||(7398452-7398555)
chr7 (54-157)||(27237421-27237524)
chr7 (57-155)||(36902924-36903022)
chr7 (65-157)||(23744808-23744900)
chr7 (54-149)||(12981327-12981422)
chr7 (58-149)||(20153206-20153297)
chr7 (70-156)||(21763586-21763672)
chr7 (55-141)||(23020498-23020583)
chr7 (55-133)||(38971255-38971333)
chr7 (54-157)||(12419493-12419596)
chr7 (169-224)||(40357311-40357366)
chr7 (54-142)||(9014782-9014863)
chr7 (100-156)||(9014177-9014233)
chr7 (54-150)||(18201138-18201234)
chr7 (19-108)||(40357413-40357494)
chr7 (56-119)||(17800257-17800320)
chr7 (172-238)||(10955605-10955671)
[»] chr6 (24 HSPs)
chr6 (19-238)||(13727317-13727536)
chr6 (19-238)||(21280514-21280733)
chr6 (19-238)||(21479463-21479683)
chr6 (37-238)||(27788608-27788807)
chr6 (19-239)||(17353923-17354143)
chr6 (37-238)||(20711638-20711839)
chr6 (19-237)||(33774086-33774305)
chr6 (33-239)||(24710913-24711122)
chr6 (25-157)||(19737691-19737823)
chr6 (33-238)||(30832443-30832647)
chr6 (19-228)||(28075752-28075964)
chr6 (58-236)||(1155767-1155947)
chr6 (76-238)||(27314097-27314259)
chr6 (37-234)||(34397844-34398039)
chr6 (19-239)||(235142-235362)
chr6 (54-150)||(6159442-6159538)
chr6 (54-150)||(2477590-2477686)
chr6 (54-149)||(20611794-20611889)
chr6 (54-145)||(21183686-21183777)
chr6 (71-156)||(30121783-30121868)
chr6 (55-133)||(4036953-4037031)
chr6 (56-100)||(27994775-27994819)
chr6 (37-98)||(19987148-19987209)
chr6 (179-232)||(19987277-19987330)
[»] chr2 (35 HSPs)
chr2 (19-238)||(4505859-4506078)
chr2 (19-235)||(6964972-6965186)
chr2 (19-240)||(12337363-12337585)
chr2 (19-239)||(3155182-3155402)
chr2 (19-238)||(29939781-29939999)
chr2 (38-235)||(10762488-10762683)
chr2 (27-238)||(8906996-8907208)
chr2 (43-239)||(26716117-26716314)
chr2 (43-238)||(9046018-9046213)
chr2 (33-238)||(7162763-7162967)
chr2 (37-238)||(27506659-27506859)
chr2 (19-238)||(24410401-24410623)
chr2 (80-234)||(40636164-40636317)
chr2 (33-238)||(3952985-3953188)
chr2 (70-235)||(34693991-34694155)
chr2 (70-235)||(34716403-34716567)
chr2 (80-232)||(5952642-5952791)
chr2 (54-157)||(16097008-16097111)
chr2 (54-155)||(38400798-38400899)
chr2 (56-157)||(24035544-24035645)
chr2 (54-157)||(21665699-21665802)
chr2 (54-157)||(28425709-28425812)
chr2 (54-157)||(7742132-7742236)
chr2 (54-157)||(13800543-13800647)
chr2 (54-157)||(12134039-12134142)
chr2 (54-156)||(16227368-16227470)
chr2 (110-238)||(8327674-8327801)
chr2 (54-123)||(37182670-37182739)
chr2 (125-238)||(1396617-1396730)
chr2 (77-156)||(42029168-42029247)
chr2 (54-156)||(11912757-11912859)
chr2 (60-128)||(22727530-22727598)
chr2 (100-156)||(11952588-11952643)
chr2 (106-149)||(10252468-10252511)
chr2 (116-157)||(22727456-22727497)
[»] chr1 (42 HSPs)
chr1 (19-238)||(44655718-44655936)
chr1 (36-238)||(14146294-14146495)
chr1 (19-240)||(5316657-5316877)
chr1 (25-239)||(5027532-5027747)
chr1 (19-238)||(23185404-23185622)
chr1 (33-238)||(6771782-6771989)
chr1 (19-240)||(19955694-19955914)
chr1 (33-240)||(3406409-3406616)
chr1 (33-240)||(3440204-3440411)
chr1 (37-238)||(17168951-17169151)
chr1 (19-235)||(50881407-50881621)
chr1 (33-232)||(16140046-16140244)
chr1 (19-238)||(4971536-4971754)
chr1 (19-238)||(9180922-9181141)
chr1 (37-238)||(9172940-9173141)
chr1 (37-238)||(40501707-40501908)
chr1 (33-221)||(41697072-41697259)
chr1 (37-238)||(1366797-1366996)
chr1 (43-157)||(27559638-27559752)
chr1 (19-238)||(27906646-27906853)
chr1 (63-239)||(21740851-21741029)
chr1 (28-238)||(51607358-51607567)
chr1 (37-235)||(13913401-13913600)
chr1 (65-238)||(6889634-6889805)
chr1 (65-238)||(6891480-6891651)
chr1 (77-238)||(22865378-22865538)
chr1 (54-156)||(38547035-38547137)
chr1 (54-157)||(45758506-45758609)
chr1 (19-150)||(44895629-44895754)
chr1 (59-157)||(38853539-38853637)
chr1 (54-157)||(39134720-39134824)
chr1 (54-149)||(43235774-43235871)
chr1 (54-156)||(26803960-26804059)
chr1 (54-150)||(33170771-33170867)
chr1 (56-157)||(5533326-5533428)
chr1 (94-157)||(17322621-17322684)
chr1 (54-157)||(50146308-50146411)
chr1 (54-156)||(6221690-6221791)
chr1 (67-149)||(35392295-35392376)
chr1 (169-224)||(34247153-34247208)
chr1 (57-157)||(10925951-10926052)
chr1 (19-108)||(34247025-34247106)
[»] scaffold0039 (1 HSPs)
scaffold0039 (28-239)||(106513-106724)
[»] chr5 (44 HSPs)
chr5 (19-230)||(34756289-34756500)
chr5 (19-238)||(9364257-9364476)
chr5 (19-238)||(16198709-16198928)
chr5 (19-238)||(38869279-38869497)
chr5 (33-233)||(2274870-2275070)
chr5 (19-238)||(16591990-16592208)
chr5 (36-238)||(27078994-27079197)
chr5 (33-238)||(15480006-15480209)
chr5 (33-234)||(19523179-19523380)
chr5 (36-238)||(36187795-36187996)
chr5 (19-235)||(30854296-30854511)
chr5 (53-238)||(22986473-22986658)
chr5 (19-238)||(16799240-16799461)
chr5 (19-237)||(28822253-28822476)
chr5 (58-238)||(31194528-31194706)
chr5 (19-238)||(27924048-27924267)
chr5 (19-239)||(7670890-7671119)
chr5 (43-152)||(40389537-40389646)
chr5 (51-157)||(23284058-23284164)
chr5 (75-224)||(7338021-7338170)
chr5 (58-238)||(31881348-31881528)
chr5 (56-157)||(36868872-36868973)
chr5 (54-156)||(14318382-14318484)
chr5 (54-149)||(2530901-2530996)
chr5 (57-149)||(26718953-26719045)
chr5 (57-149)||(26988697-26988789)
chr5 (54-157)||(1366522-1366625)
chr5 (54-157)||(33037781-33037884)
chr5 (54-156)||(2412089-2412191)
chr5 (57-157)||(2024638-2024738)
chr5 (54-157)||(34425904-34426007)
chr5 (55-149)||(24395741-24395835)
chr5 (56-157)||(10407464-10407565)
chr5 (65-155)||(22648734-22648824)
chr5 (54-156)||(41911614-41911716)
chr5 (62-149)||(10543682-10543769)
chr5 (54-157)||(11242314-11242417)
chr5 (169-238)||(23283943-23284012)
chr5 (54-157)||(40794323-40794426)
chr5 (108-157)||(606209-606258)
chr5 (173-230)||(40389461-40389518)
chr5 (54-134)||(15639644-15639724)
chr5 (66-150)||(17344969-17345053)
chr5 (113-157)||(27530543-27530587)
[»] chr8 (35 HSPs)
chr8 (19-238)||(45475783-45476001)
chr8 (19-238)||(2952137-2952358)
chr8 (19-235)||(30883295-30883512)
chr8 (19-235)||(13534609-13534823)
chr8 (19-235)||(13624149-13624363)
chr8 (19-238)||(23606548-23606766)
chr8 (33-238)||(37430076-37430281)
chr8 (19-238)||(23798179-23798398)
chr8 (19-238)||(3048435-3048654)
chr8 (37-238)||(42600766-42600967)
chr8 (19-238)||(41879147-41879364)
chr8 (37-239)||(10917375-10917576)
chr8 (19-156)||(5860744-5860881)
chr8 (54-157)||(5973106-5973209)
chr8 (54-157)||(7944521-7944624)
chr8 (54-157)||(11290185-11290288)
chr8 (54-156)||(39332405-39332507)
chr8 (54-134)||(5942697-5942777)
chr8 (54-149)||(8102913-8103008)
chr8 (54-157)||(15167414-15167517)
chr8 (54-157)||(41677172-41677276)
chr8 (59-157)||(34789861-34789959)
chr8 (62-157)||(8646215-8646309)
chr8 (54-148)||(5721560-5721654)
chr8 (54-149)||(15078759-15078854)
chr8 (77-156)||(30674403-30674482)
chr8 (169-238)||(20003728-20003797)
chr8 (54-156)||(14509983-14510084)
chr8 (54-149)||(25561502-25561595)
chr8 (77-150)||(23941097-23941170)
chr8 (57-156)||(34048705-34048806)
chr8 (111-156)||(9108551-9108596)
chr8 (110-149)||(34868184-34868223)
chr8 (105-157)||(38009151-38009203)
chr8 (170-224)||(5860674-5860728)
[»] chr4 (53 HSPs)
chr4 (19-238)||(34027550-34027768)
chr4 (33-239)||(32915370-32915576)
chr4 (43-239)||(54780772-54780969)
chr4 (19-238)||(32128555-32128774)
chr4 (19-238)||(34768492-34768710)
chr4 (19-234)||(47128958-47129172)
chr4 (19-238)||(10978871-10979092)
chr4 (19-224)||(38209522-38209727)
chr4 (45-238)||(2790659-2790851)
chr4 (43-227)||(43455460-43455643)
chr4 (37-238)||(37777140-37777341)
chr4 (19-238)||(48209211-48209436)
chr4 (33-239)||(37514644-37514849)
chr4 (37-239)||(16845010-16845211)
chr4 (33-238)||(5128758-5128964)
chr4 (33-234)||(1105517-1105717)
chr4 (19-238)||(19498475-19498691)
chr4 (19-238)||(54083160-54083378)
chr4 (19-147)||(13460178-13460306)
chr4 (19-235)||(35779248-35779461)
chr4 (25-239)||(10428115-10428335)
chr4 (19-238)||(55255240-55255447)
chr4 (19-239)||(40089487-40089715)
chr4 (19-238)||(16882313-16882531)
chr4 (80-238)||(17679432-17679589)
chr4 (31-224)||(35465090-35465281)
chr4 (37-232)||(38352189-38352373)
chr4 (75-238)||(16922245-16922409)
chr4 (76-222)||(51964736-51964884)
chr4 (19-107)||(23509846-23509934)
chr4 (19-157)||(24969408-24969536)
chr4 (54-150)||(36118463-36118559)
chr4 (54-157)||(52468292-52468395)
chr4 (54-136)||(4167910-4167992)
chr4 (60-150)||(36178684-36178774)
chr4 (54-150)||(27112036-27112132)
chr4 (90-157)||(51691913-51691980)
chr4 (54-150)||(2135326-2135422)
chr4 (84-238)||(9578575-9578736)
chr4 (102-222)||(23508443-23508564)
chr4 (54-148)||(37744916-37745011)
chr4 (55-157)||(39329390-39329492)
chr4 (77-157)||(39655252-39655332)
chr4 (54-157)||(10041998-10042101)
chr4 (54-157)||(24396940-24397043)
chr4 (169-238)||(24969717-24969786)
chr4 (54-143)||(40217238-40217327)
chr4 (54-150)||(45656181-45656277)
chr4 (62-157)||(36362869-36362964)
chr4 (55-147)||(15735102-15735189)
chr4 (113-156)||(24614018-24614061)
chr4 (115-157)||(30507120-30507162)
chr4 (92-142)||(29425187-29425237)
[»] scaffold0070 (1 HSPs)
scaffold0070 (25-238)||(1315-1527)
[»] scaffold1590 (1 HSPs)
scaffold1590 (54-157)||(257-360)
[»] scaffold0012 (1 HSPs)
scaffold0012 (54-149)||(206496-206591)
[»] scaffold0097 (1 HSPs)
scaffold0097 (54-150)||(38926-39022)
[»] scaffold0182 (1 HSPs)
scaffold0182 (56-156)||(23993-24093)
[»] scaffold0018 (1 HSPs)
scaffold0018 (54-150)||(173516-173612)
[»] scaffold0001 (2 HSPs)
scaffold0001 (99-238)||(183106-183244)
scaffold0001 (33-103)||(181899-181969)
[»] scaffold0007 (1 HSPs)
scaffold0007 (55-157)||(230858-230960)
[»] scaffold1320 (1 HSPs)
scaffold1320 (54-149)||(1355-1450)
[»] scaffold0022 (2 HSPs)
scaffold0022 (54-157)||(40086-40191)
scaffold0022 (54-157)||(138146-138251)
[»] scaffold0003 (1 HSPs)
scaffold0003 (77-130)||(351360-351413)
[»] scaffold0227 (2 HSPs)
scaffold0227 (54-121)||(16028-16095)
scaffold0227 (111-156)||(16123-16168)
[»] scaffold0229 (1 HSPs)
scaffold0229 (49-146)||(23879-23976)


Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 237 - 934
Target Start/End: Original strand, 26403670 - 26404371
Alignment:
Q  237 tgtacctgatacgtgaacgaatatagttgattttgagtgattttattccaatctaatatttatcggtaagaaaaatgtaaaccaaaatacctcggttatt 336  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26403670 tgtacctgatacctgaacgaatagagttgattttgagtgattttattttaatctaatatttatcggtaagaaaaatgtaaacaaaaatacctcggttatt 26403769  T
Q  337 tatttcgtataaataatcaatagaacaatatatttgagttttacatcttttgtcttctcttgtttttagaatcctaacaaattgagttgctgctcnnnnn 436  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |         
T  26403770 tatttcgtatacataattagtagaacaatatatttgagttttacatcttttgtcttctcttgtttttagaatcctagcaaattgagtttctgtacaaaaa 26403869  T
Q  437 nnnnnnncaagaaaactcgacta--tatagcatatttgtaacatatagaaaaatctttccaggttcacatcgttaccgatcatatctaaaaactcttcat 534  Q
           ||||||||||||||||  |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26403870 taaaaaacaagaaaactcgactaaatataccatatttggaacatataaaaaaatctttccaggttcacatcgttaccgatcatatctaaaaactcttcat 26403969  T
Q  535 ttctagattgttattcttattaatatatgttattatgaaatatgaatggatgtgacctagattctctccaaatgcgagactcgatggttttgggactgaa 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26403970 ttctagattgttattcttattaatatatgttattatgaaatatgaatggatgtgacctagattctctccaaatgcgagactcgatggttttgggattgaa 26404069  T
Q  635 atca--caactcaaattctaattttaccgattcaaatttcaattacaactcaaaattttagttgtttgttcttcatcaatttctctacatgtcaagtggc 732  Q
    ||||  |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26404070 atcagacaactcaaattctacttttaccgattcaaatttcaaatacaactcaaaattttagttgtttgttcttcatcaatttctctacatgtcaagtggc 26404169  T
Q  733 cgattacgagaagaattaatttagatttcttgtagtagataaatacacgatgaaatgattttaactattctatcttgaccggtctactcatgtatcatct 832  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26404170 cgattacgataagaattaatttagatttcttgtagtagataaatacacgatgaaatgattttaactattctatcttgaccggtctactcatgtatcatct 26404269  T
Q  833 tgaaatttggagtttaaatgaaaaaatggaatctgagccattcgatcttgatcttattgtgaaagtgacatgagtcaaaaaattgtgtaatcccatacta 932  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  26404270 tgaaatttggagtttaaatgaaaaaatggaatctgaaccattcgatcttgatcttaatgtgaaagtgacatgactcaaaaaattgtgtaatcccatacta 26404369  T
Q  933 ca 934  Q
    ||    
T  26404370 ca 26404371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54619340 - 54619121
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54619340 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 54619241  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            ||||||||||||||| |||| | |||||||| ||||||| |||||||||    
T  54619240 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcattggcttcttttcatttccagagccgagcctccg 54619141  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  54619140 aattctcagggacggccctg 54619121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 38681230 - 38681011
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  38681230 agaattagttcctcttgattttggtgttaggtggggtttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgta 38681131  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  38681130 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 38681031  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  38681030 aattctcagggacggccctg 38681011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 21582754 - 21582960
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21582754 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaa 21582853  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggac 231  Q
    |||||||||| ||||||| ||||||          | ||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||    
T  21582854 aatataaataaaacattgttcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaagccgagcctccgaattctcagggac 21582953  T
Q  232 ggccctg 238  Q
    |||||||    
T  21582954 ggccctg 21582960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 47467667 - 47467872
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  47467667 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaa 47467766  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| |||||||            ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||    
T  47467767 aatataaatagaacatcgctctttaaaaaaaaaacacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacg 47467866  T
Q  233 gccctg 238  Q
    ||||||    
T  47467867 gccctg 47467872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 36716162 - 36715941
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  36716162 agaattagttcctcttgattttggtgttaggtgggggtccctcacgtatacggtggtcgttttcacctctgggtgtaccgcatatatacggcaccttgta 36716063  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||          |  ||||| |||||||||||||||| |||||||| ||||||| ||||||||    
T  36716062 tttatcttttaaaaaatataaatagaacattgctcttttaaataaaaattatgtttttattttatcactggcctcttttcatttccagagccgagcctcc 36715963  T
Q  218 gaattcttagggacggccctgt 239  Q
    ||||||| ||||||||||||||    
T  36715962 gaattctcagggacggccctgt 36715941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 3954033 - 3953816
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  3954033 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgta 3953934  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||| ||||||           | |||| |||||||||||||||| |||||||| ||||||| || ||||||    
T  3953933 tttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaata-cattttaattttatcactggcctcttttcatttccagagcggaacctccg 3953835  T
Q  219 aattcttagggacggccct 237  Q
    |||||| ||||||||||||    
T  3953834 aattctcagggacggccct 3953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 44708464 - 44708660
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  44708464 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaata 44708563  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    ||||||||||||| || ||||           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  44708564 taaatagaacatttct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagttgagcctccgaattcttagggacggc 44708660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34290773 - 34290553
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||    
T  34290773 agaattaggtcctcttgtttttggtgttaggtgggggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttata 34290674  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||| | ||||           ||||||||||||||||||| | | |||||||||||||||| |||||||||    
T  34290673 tttatcttttaaaaaatataaatagaacattgtttttttaaaaaaaaatacgttttgattttatcactgacttcttttcattcccagagccgagcctccg 34290574  T
Q  219 aattcttagggacggccctgt 239  Q
    |||||||| ||||||||||||    
T  34290573 aattcttaaggacggccctgt 34290553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 8073474 - 8073257
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| ||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  8073474 agaattagttcctattgcttttggtgttatgtgggg-ttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgta 8073376  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||||||||||| |||||||           ||||||||||||||||||| ||| |||||||| ||||||| |||||||||    
T  8073375 tttatcttttaaaaaatataaatagaacattactcttttaaaaaaaata-cgttttgattttatcactgacctcttttcatttccagagccgagcctccg 8073277  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  8073276 aattctcagggacggccctg 8073257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 53149437 - 53149235
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  53149437 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaa 53149338  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           |||||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||    
T  53149337 aatataaatagaacatcgctcttttaaaaaaaaaaacgttttgattttatcactggtctcttttcattccccgaactgagcctccgaattctcagagacg 53149238  T
Q  233 gcc 235  Q
    |||    
T  53149237 gcc 53149235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 42098784 - 42098989
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||    
T  42098784 ttgattttggtgttaagtaggggttcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaa 42098883  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           | ||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||||    
T  42098884 aatataaatagaacatcgctcttttaaaaaaaaagacattttgattttatcactggcctcttttcatttcccgagctgagccttcgaattctcagggacg 42098983  T
Q  233 gccctg 238  Q
    ||||||    
T  42098984 gccctg 42098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 43207374 - 43207156
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||| |||||| ||    
T  43207374 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttga-tgtaccgcatatatacggcaccttata 43207276  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||| | |||||||||||||| |||||||||||||||| ||||||||     
T  43207275 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgtttttaatttatcactggcctcttttcattcccagagccgagcctcca 43207177  T
Q  219 aattcttagggacggccctgt 239  Q
    |||||||||||||||||||||    
T  43207176 aattcttagggacggccctgt 43207156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 43 - 234
Target Start/End: Original strand, 37168360 - 37168551
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  37168360 tgttaggtgggagttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaata 37168459  T
Q  143 gaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    |||||||| | ||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  37168460 gaacattgtttttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggc 37168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 27078706 - 27078486
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||| | ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  27078706 agaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgta 27078607  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||| ||||          |  |||||||||||||||||| ||| |||||||| |||||||  |||||||    
T  27078606 tttatcttttaaaaaatataaatagaacattgcttttttaaaaaaaaattatgttttgattttatcactgacctcttttcatttccagagccaagcctcc 27078507  T
Q  218 gaattcttagggacggccctg 238  Q
    ||||||| |||||||||||||    
T  27078506 gaattctcagggacggccctg 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 27084503 - 27084283
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||| | ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  27084503 agaattagttcatcttgattttggtgttaggtaggggtttctcatgtatacggtagtcattttcacctctgggtataccgcatatatacggcactttgta 27084404  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||| ||||          |  |||||||||||||||||| ||| |||||||| |||||||  |||||||    
T  27084403 tttatcttttaaaaaatataaatagaacattgcttttttaaaaaaaaattatgttttgattttatcactgacctcttttcatttccagagccaagcctcc 27084304  T
Q  218 gaattcttagggacggccctg 238  Q
    ||||||| |||||||||||||    
T  27084303 gaattctcagggacggccctg 27084283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 18372448 - 18372656
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgc----atatatacgacacct 114  Q
    ||||| ||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||    |||||||||||||||    
T  18372448 agaattagttcctcttgattttggtgttagatggggattcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacacct 18372547  T
Q  115 tgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||| ||||||||||||| |  |||||    
T  18372548 tgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcccagtgtcgagcc 18372646  T
Q  215 tccgaattct 224  Q
    ||||||||||    
T  18372647 tccgaattct 18372656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 50939370 - 50939152
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||| |||||| ||    
T  50939370 agaattaggtccttttgcttttggtgttaggcgggggttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttata 50939271  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||| ||||||| ||||           ||||||||||||||||||||||| ||||||||| |||||| ||||| |||    
T  50939270 tttatcttttaaaaaatataaatagatcattgct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcccccg 50939172  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  50939171 aattcttagggacggccctg 50939152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 53507021 - 53506802
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||    
T  53507021 agaattaggtcctcttgcttttggtgttaggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttata 53506922  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||| | ||||          |  |||||||||||||||||||||| | |||||||||||||| |||||| |    
T  53506921 tttatcttttaaaaaatataaatagaacattgtttttttaaaaaaaaaatatgttttgattttatcactggcctctcttcattcccagagccgagccttc 53506822  T
Q  218 gaattcttagggacggccctg 238  Q
    ||||||||| |||||||||||    
T  53506821 gaattctta-ggacggccctg 53506802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54407294 - 54407073
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||    
T  54407294 agaattaggtcctcttgcttttggtgttaggtgggggttact-atgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttata 54407196  T
Q  119 tttatcttttaaaaaatataaatagaacattg---ctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcct 215  Q
    ||||||||||||||||||||||||||||||||    | ||||           ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  54407195 tttatcttttaaaaaatataaatagaacattgttttttttttaaaaaaaaaaacgttttgattttatcaccggcctcttttcattcccagagccgagcct 54407096  T
Q  216 ccgaattcttagggacggccctg 238  Q
    |||||||||||||||||||||||    
T  54407095 ccgaattcttagggacggccctg 54407073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 50258731 - 50258542
Alignment:
Q  49 gtgggggttcctcatgtatacggtagtcattttcacc-tctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaaca 147  Q
    |||||||||||||||| ||||  |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50258731 gtgggggttcctcatgcatacaatagtcattttcaccctccgggtgtaccgcatatatacgacaccttgtatttattttttaaaaaatataaatagaaca 50258632  T
Q  148 ttgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    | ||||||||          | ||||||||||||||||||  || ||||| |||||||||| ||||||||||||||| ||| |||||||||    
T  50258631 tcgctctttttaaaaaaatat-gttttgattttatcactgatctcttttcgttcccagagccgagcctccgaattctcaggaacggccctg 50258542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 36605973 - 36606149
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc-ttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |    
T  36605973 cctcatgtatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctctat 36606071  T
Q  157 tnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    |           ||||||||||||||||||| ||| |||||||| ||||||| || |||||||||| | ||||||||||    
T  36606072 taaaaaaaata-cgttttgattttatcactgacctcttttcatttccagagccgaacctccgaattttcagggacggcc 36606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 9878824 - 9878686
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| |||||  ||||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||  |||||| ||    
T  9878824 agaattaggtcctcttgcttttggcgttagatgggggttccttatgtatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttata 9878725  T
Q  119 tttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  9878724 tttatcttttaaaaaatataaatagaatattgctctttt 9878686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 48157117 - 48157310
Alignment:
Q  28 tcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttt 127  Q
    |||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||          |||||| |||||||||||    
T  48157117 tcctcttgcttttgatgttaagtgggggttcctcatgtatacagtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttt 48157206  T
Q  128 taaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttag 227  Q
    ||||||||||||||||| ||||||  ||||          | |||||||||||||||||||||| |||| |||||| || | ||||||||||||||||||    
T  48157207 taaaaaatataaatagatcattgcattttttttaaaaatgt-gttttgattttatcactggcctctttttattcccggaaccgagcctccgaattcttag 48157305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 29620519 - 29620423
Alignment:
Q  25 agttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtattt 121  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  29620519 agttcctcttgattgtggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 32319257 - 32319162
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||| | |||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  32319257 ggttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaacatt 32319162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 54574929 - 54574826
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| |||||| ||||| || | |||||||||||||||||||||  ||||||||||||| |||| |||||| |||||||||||||| ||    
T  54574929 ggttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacattgttc 54574830  T
Q  154 tttt 157  Q
    ||||    
T  54574829 tttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 49393099 - 49393195
Alignment:
Q  59 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||| ||||| |||| |||||||||  |||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||    
T  49393099 ctcatgtatacggtagtaatttttacctttgggtgtaca-catatatacgacgccttgtatttatcttttaaaaaatttaaagagaacattgttcttt 49393195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 8420330 - 8420425
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||| | ||||||| ||| |||||||| | |||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  8420330 ggttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacatt 8420425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 25855426 - 25855527
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||| || ||||||||||||| ||||||| || |||||| ||  |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||    
T  25855426 ggttcttcgtgtatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgta-ttatcttttaaaaaatttaaatagaacattgttc 25855524  T
Q  154 ttt 156  Q
    |||    
T  25855525 ttt 25855527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 26279563 - 26279649
Alignment:
Q  71 gtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||| ||||||| || ||||||||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  26279563 gtagtgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatttaaatagaacattgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 48720498 - 48720427
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctgta 240  Q
    ||||||||||||||||||  ||| |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  48720498 cgttttgattttatcacttacctcttttcattcccagagccgagcctcccaattcttagggacggccctgta 48720427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 789940 - 790042
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| ||| || ||||| |||| |||||||||  |||||||| ||||||||||||||||  |||||||||| ||||||||| |||| ||    
T  789940 ggttcctcatgtatatggtggtgatttttacctttgggtgtacaacatatatatgacaccttgtatttattgtttaaaaaatttaaatagaagattgttc 790039  T
Q  154 ttt 156  Q
    |||    
T  790040 ttt 790042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 28689458 - 28689368
Alignment:
Q  59 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||||| ||| |||||||||| ||| | || |||||||||||| |||||||||||||||||||  ||||| |||||||||||||    
T  28689458 ctcatgtatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaatttaaatagaacatt 28689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 23641382 - 23641329
Alignment:
Q  92 tgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaa 145  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23641382 tgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaa 23641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 42453435 - 42453511
Alignment:
Q  81 tcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||| | |||||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  42453435 tcacctttaggtgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaattgaacattgttctttt 42453511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 29620426 - 29620364
Alignment:
Q  176 attttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  29620426 attttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29620364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 52374660 - 52374763
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||| |||||||||||||||| |||||| ||| | | |||| ||||| |||||||||| |||||||||| |   ||||||| |||||||||||||| ||    
T  52374660 ggttcttcatgtatacggtagtgattttctcctttagatgtatcgcatctatacgacacattgtatttatttaaaaaaaaatttaaatagaacattgttc 52374759  T
Q  154 tttt 157  Q
    ||||    
T  52374760 tttt 52374763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 8e-79; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 29077186 - 29077404
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29077186 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgta 29077285  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  29077286 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcccagagccgagcctccg 29077384  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  29077385 aattctcagggacggccctg 29077404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 8171675 - 8171460
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  8171675 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgta 8171576  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           || |||||||||||||||| ||| |||||||||||||||| |||||||||    
T  8171575 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgctttgattttatcactgacctcttttcattcccagagccgagcctccg 8171477  T
Q  219 aattcttagggacggcc 235  Q
    |||||| ||||||||||    
T  8171476 aattctcagggacggcc 8171460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 18776902 - 18776683
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  18776902 agaattagttcctcttgtttttggtgttaggtgggggtttctcatgtatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgta 18776803  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||| ||| |||||||| ||||||| |||||||||    
T  18776802 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatattttgattttatcactgacctcttttcatttccagagccgagcctccg 18776703  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  18776702 aattctcagggacggccctg 18776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 12596409 - 12596207
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  12596409 ttgattttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaa 12596310  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| |||||||            ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  12596309 aatataaatagaacatcgctcttt---aaaaaaaaacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacg 12596213  T
Q  233 gccctg 238  Q
    ||||||    
T  12596212 gccctg 12596207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 20091399 - 20091196
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  20091399 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 20091300  T
Q  137 taaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    |||||||| ||||| | ||||          | ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  20091299 taaatagatcattgttttttttaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggcc 20091200  T
Q  236 ctgt 239  Q
    ||||    
T  20091199 ctgt 20091196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 10329546 - 10329326
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||| | || |||||||||| |||||| ||    
T  10329546 agaattaggtcctcttgcttttggtgttaagtgggggtttctcatgtatacggtagtcattttcacctttgggttttcctcatatatacggcaccttata 10329447  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  10329446 tttatcttttaaaaaatataaatagaacattgcttttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccg 10329347  T
Q  219 aattcttagggacggccctgt 239  Q
    |||||||||| ||||||||||    
T  10329346 aattcttaggaacggccctgt 10329326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 23551207 - 23550988
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||    
T  23551207 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttata 23551108  T
Q  119 tttatcttttaa-aaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||| |||||||||||||| ||||||| ||||          | |||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  23551107 tttatcttttaaaaaaatataaatagatcattgctttttttaaaaaaatat-gttttgattttatcactggcctcttttcattctcagagccgagcctcc 23551009  T
Q  218 gaattcttagggacggccctg 238  Q
    ||||||||||||||| |||||    
T  23551008 gaattcttagggacgaccctg 23550988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 48983962 - 48983756
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48983962 ttttggtgttaggtgggggttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaata 48983863  T
Q  137 taaatagaacattgctctttt-----nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggac 231  Q
    |||||||| ||||| | ||||                |||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||    
T  48983862 taaatagatcattgttttttttaaaaaaaaaaaaatacgttttgattttatcattggcctcttttcattctcagagccgagcctccgaattcttagggac 48983763  T
Q  232 ggccctg 238  Q
    |||||||    
T  48983762 ggccctg 48983756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 38415012 - 38414793
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||| ||    
T  38415012 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttata 38414913  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||| ||||||||| ||||||||||           |||||||||||||| ||| | || |||||||| ||||||  |||||||||    
T  38414912 tttatcttttaaaaaatacaaatagaacgttgctcttttgcaaaaaaatacgttttgattttatgactagtctcttttcatttccagagtcgagcctccg 38414813  T
Q  219 aattcttagggacggccctg 238  Q
    |||||||||||||| |||||    
T  38414812 aattcttagggacgaccctg 38414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 10955464 - 10955588
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  10955464 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaa 10955563  T
Q  133 aatataaatagaacattgctctttt 157  Q
    |||||||||||||||| ||||||||    
T  10955564 aatataaatagaacatcgctctttt 10955588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 43 - 238
Target Start/End: Complemental strand, 47985082 - 47984885
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa-aaaatataaat 141  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  47985082 tgttaggtgggggttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatttttcttttaaaaaaatataaat 47984983  T
Q  142 agaacattgctctttt-nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||| ||||            ||||||||||||||||||||| | |||||||||||||||| |||||  ||||||||||||||||||||||    
T  47984982 agaacattgcttttttaaaaaaaaaacacgttttgattttatcactggcatcttttcattcccagagccgagccaacgaattcttagggacggccctg 47984885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24525821 - 24525599
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| |||||| ||    
T  24525821 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttata 24525722  T
Q  119 tttatcttttaaaaaatataaatagaacattgctctt---ttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcct 215  Q
    |||||||||||||||||||||||||||||||| | ||                ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  24525721 tttatcttttaaaaaatataaatagaacattgtttttaaaaaaaaaaaaaatacgttttgattttatcacaggcctcttttcattcccagagccgagcct 24525622  T
Q  216 ccgaattcttagggacggccctg 238  Q
    ||||||||||||||||| |||||    
T  24525621 ccgaattcttagggacgaccctg 24525599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 19692060 - 19692279
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||| | ||||||||||||||||||  |||||||||||||| | ||||||||||||||||| | |||||| ||    
T  19692060 agaattaggtcctcttgcttttggtgttaggcgagggttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttata 19692159  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||| |  |||||||| ||||||| |||| ||||    
T  19692160 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatacgttttgattttatcactggacacttttcatttccagagccgagcttccg 19692259  T
Q  219 aattcttagggacggccctg 238  Q
    |||||||||||| |||||||    
T  19692260 aattcttagggagggccctg 19692279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 25010399 - 25010613
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          |||||| ||    
T  25010399 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc----------caccttata 25010488  T
Q  119 tttatcttttaaaaaa--tataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcct 215  Q
    ||||||||||||||||  |||||||||| ||||||| ||||          | ||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  25010489 tttatcttttaaaaaaaatataaatagatcattgcttttttttttaaaaaatacgttttgattttatcactggcctcttttcatttccagagccgagcct 25010588  T
Q  216 ccgaattcttagggacggccctgta 240  Q
    |||||||||||||||||||||||||    
T  25010589 ccgaattcttagggacggccctgta 25010613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 75 - 238
Target Start/End: Original strand, 26254015 - 26254178
Alignment:
Q  75 tcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgtttt 174  Q
    ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||            |||||    
T  26254015 tcattttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatatgtttt 26254114  T
Q  175 gattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||| ||| |||||||||||| ||| ||||||||||||||| |||||| ||||||    
T  26254115 gattttatcactgacctcttttcattcccaaagccgagcctccgaattctcagggacagccctg 26254178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 28749715 - 28749895
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  28749715 cctcatgtatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatttatcttttcaaaaatataaatagaatattgctctttt 28749813  T
Q  158 nnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
              |  ||||||||||||||| ||| || |||||||||||||||| ||||||||||||| | |||||||||||||    
T  28749814 gaaaaaaaaatatgttttgattttatcattggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 28749895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 8239686 - 8239869
Alignment:
Q  52 ggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgc 151  Q
    |||||||||||| ||||||||| |||||||||| | |||||||||| |||||||||| ||| || ||||||| ||||||||||||||||||||||||| |    
T  8239686 ggggttcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaatataaatagaacattac 8239785  T
Q  152 tcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    ||||||           |||||| ||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||||||    
T  8239786 tcttttaaaaaaaata-cgttttcattttatcattggcctcttttcatttccagagccgagcctccaaattcttagggacggccc 8239869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 2611363 - 2611260
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||| || || |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  2611363 ggttcctcatgtatacagttgtgattttcaccattgtgtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 2611264  T
Q  154 tttt 157  Q
    ||||    
T  2611263 tttt 2611260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 9021898 - 9021799
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||| | |||| |||||    
T  9021898 tcctcatgtatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 33162418 - 33162338
Alignment:
Q  76 cattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  33162418 cattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagagcattgctcttt 33162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 6765771 - 6765680
Alignment:
Q  65 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||| |||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6765771 tatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttcttt 6765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 36891579 - 36891674
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||||| |||||||||| ||| ||||||| |||||||| |||| ||||||| ||| ||||||||||||||||||||||||    
T  36891579 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatataaatagaacatt 36891674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 23859077 - 23859169
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||||||||||| ||||||| || |||||||| ||||||||||||  || |||||||||||||||||||||| |||||||||||||    
T  23859077 tcctcatgtatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaatttaaatagaacatt 23859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 7398452 - 7398555
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| |||||| |||||||||| | |||||| | |||||||| | |||||||||||||||||| ||||||| |||||||||||||| ||    
T  7398452 ggttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaatttaaatagaacattgttc 7398551  T
Q  154 tttt 157  Q
    ||||    
T  7398552 tttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 27237524 - 27237421
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||||| |||| |||||||||| | | |  | | ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||    
T  27237524 ggttcctcatgtatacgatagtgattttcacctttagattcatcacatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 27237425  T
Q  154 tttt 157  Q
    ||||    
T  27237424 tttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 36903022 - 36902924
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    ||||||||||||| ||| | |||||||||| | |||||||  ||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||    
T  36903022 tcctcatgtatacagtactgattttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 23744808 - 23744900
Alignment:
Q  65 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||| ||||| | || | |||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctttt 23744900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 12981327 - 12981422
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||| ||||| ||||| |||||||||| || ||||||||| |||||| |  ||||||||||||||||||||||||  |||||||||||||    
T  12981327 ggttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaatagaacatt 12981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 20153206 - 20153297
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||| ||| ||||||| || ||||| || ||||||||||| |||| |||||||||||||||||||||| |||||| ||||||    
T  20153206 cctcatgtatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaataaaacatt 20153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 21763672 - 21763586
Alignment:
Q  70 ggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||| |||||||| | | |||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| || |||||    
T  21763672 ggtagtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttcttt 21763586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 23020583 - 23020498
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaat 141  Q
    ||||||||||||||||||||| |||||||||| || ||||   |||||||||| ||||||| ||||||||||||||||||| |||||    
T  23020583 gttcctcatgtatacggtagtgattttcacctttgagtgtgt-gcatatatacaacaccttatatttatcttttaaaaaatctaaat 23020498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 38971255 - 38971333
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 133  Q
    ||||||| ||| ||||||||| |||||||| | | ||||||   |||||||||||||||||||||||||||||||||||    
T  38971255 gttcctcgtgtttacggtagtgattttcacatttaggtgtataacatatatacgacaccttgtatttatcttttaaaaa 38971333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 12419596 - 12419493
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||| |  |||| ||||||| || ||| |||| | || ||||| |  || |||||||||||||||||||||| |||||||||||||| ||    
T  12419596 ggttcctcatgtattcaatagtgattttcatctttggatgtatcacacatataaggtacattgtatttatcttttaaaaaatttaaatagaacattgttc 12419497  T
Q  154 tttt 157  Q
    ||||    
T  12419496 tttt 12419493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 40357366 - 40357311
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    ||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  40357366 cgttttgattttatcactgaccttttttcatttccagagccgagcctccgaattct 40357311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 9014863 - 9014782
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    |||| ||||||||||||||||| |||||||||| |||||       ||||||||||||| |||||||||||||||| ||||| ||||||    
T  9014863 ggttactcatgtatacggtagtgattttcacctttgggt-------atatatacgacacattgtatttatcttttacaaaatttaaata 9014782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 9014233 - 9014177
Alignment:
Q  100 atatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||||| |||| |||||||||||||||||||||| |||||| ||||||| |||||    
T  9014233 atatatacaacacattgtatttatcttttaaaaaatttaaataaaacattgttcttt 9014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 18201138 - 18201234
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||||| || ||||   |||||||||  | |||||||| |||||||| | || ||||||||||| ||||||||||| |||||||| |||||    
T  18201138 ggttcctcatgtgtaaggtaacgattttcacccttaggtgtaccacatatatatggcatcttgtatttatattttaaaaaatttaaatagatcattg 18201234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 40357494 - 40357413
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacg 108  Q
    ||||| ||||| | ||||||||| |||||||||||||||||        |||||||||||||||| |||| |||||||||||||||||||    
T  40357494 agaattagttcatcttgattttggtgttaggtgggggttcc--------acggtagtcattttcatctcttggtgtaccgcatatatacg 40357413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 17800320 - 17800257
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtat 119  Q
    ||||||||| |||||||||| |||||||| | |||||||||  ||||||||||||| |||||||    
T  17800320 ttcctcatgcatacggtagtgattttcacttttgggtgtacaacatatatacgacaacttgtat 17800257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 10955605 - 10955671
Alignment:
Q  172 tttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||||| ||||||| ||| | ||||||||| |||||||||||||||||||| | |||| ||||||    
T  10955605 tttgatttaatcactgacctctattcattccccgagctgagcctccgaattctcatggacagccctg 10955671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 8e-79; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 13727536 - 13727317
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13727536 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 13727437  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  13727436 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 13727337  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  13727336 aattctcagggacggccctg 13727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 21280514 - 21280733
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  21280514 agaattagttcctcttgattttggtgttaggtgggagttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgta 21280613  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  21280614 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 21280713  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  21280714 aattctcagggacggccctg 21280733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 21479463 - 21479683
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21479463 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 21479562  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||          |  |||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  21479563 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctcc 21479662  T
Q  218 gaattcttagggacggccctg 238  Q
     |||||| || ||||||||||    
T  21479663 aaattctcagagacggccctg 21479683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 27788807 - 27788608
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  27788807 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 27788708  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    ||||||||| |||||||||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  27788707 taaatagaaaattgctcttttaaaaaaata--cgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccc 27788610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 17353923 - 17354143
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||    
T  17353923 agaattaggtcctcttgcttttggtgttaggtgggggttcatcatgtatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttata 17354022  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||||| ||| |||||||||| ||||  |||||||||    
T  17354023 tttatcttttaaaaaatataaatagaacattgctttttttaaaaaaaatacgttttgattttatcactgacctcttttcattccaagagtcgagcctccg 17354122  T
Q  219 aattcttagggacggccctgt 239  Q
    |||||||||||||||||||||    
T  17354123 aattcttagggacggccctgt 17354143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 20711839 - 20711638
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  20711839 ttttaatgttagatgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 20711740  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||||||||||||||||           |||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||| ||||||| |||    
T  20711739 taaatagaacattgctcttttaaaaaaaaatacgttttgattttatgactgacctcttttcattcccagaaccgagcctccgaattctcagggacgtccc 20711640  T
Q  237 tg 238  Q
    ||    
T  20711639 tg 20711638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 33774086 - 33774305
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  33774086 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgta 33774185  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    ||||||||||||||||||||||||||||||| |||||||          |  ||||||||||||| |||||||| ||||||||  |||||| ||||||||    
T  33774186 tttatcttttaaaaaatataaatagaacattactcttttaaaaaaaaattatgttttgattttattactggcctcttttcattttcagagccgagcctcc 33774285  T
Q  218 gaattcttagggacggccct 237  Q
    ||||||| | ||| ||||||    
T  33774286 gaattctcaaggatggccct 33774305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 24711122 - 24710913
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  24711122 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaa 24711023  T
Q  133 aatataaatagaacattgctcttt---tnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttaggg 229  Q
    ||||||||||||||||  ||||||               ||||||||||||||||||  ||| ||||||||||| |||||||||||||||||||| ||||    
T  24711022 aatataaatagaacatcactctttaaaaaaaaaaaaaaacgttttgattttatcactaacctcttttcattccctgagctgagcctccgaattctcaggg 24710923  T
Q  230 acggccctgt 239  Q
    ||||||||||    
T  24710922 acggccctgt 24710913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 19737823 - 19737691
Alignment:
Q  25 agttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc 124  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  19737823 agttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatc 19737724  T
Q  125 ttttaaaaaatataaatagaacattgctctttt 157  Q
    ||| |||||||||||||||||||||||||||||    
T  19737723 tttaaaaaaatataaatagaacattgctctttt 19737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 30832647 - 30832443
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| || ||||||||||| ||||||||    
T  30832647 ttgattttggtgttaggtgggggttcctcatgcatacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaa 30832548  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    ||| |||||||||||| || |||||           ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||||    
T  30832547 aatgtaaatagaacatcgcgctttttaaaaaaata-cgttttgattttatcactggcctcttttcattcccagagccgagccttcgaattctcagggacg 30832449  T
Q  233 gccctg 238  Q
    ||||||    
T  30832448 gccctg 30832443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 28075752 - 28075964
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||    
T  28075752 agaattaggtcctcttgtttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttata 28075851  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttt---tnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcct 215  Q
    |||||||||||||||||||||||||||||||||| |||               |||||||||||| |||||||||| |||||||||||||||| ||||||    
T  28075852 tttatcttttaaaaaatataaatagaacattgctttttaaaataaaaaaaatacgttttgattttttcactggcctcttttcattcccagagccgagcct 28075951  T
Q  216 ccgaattcttagg 228  Q
    || ||||||||||    
T  28075952 ccaaattcttagg 28075964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 1155947 - 1155767
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  1155947 cctcatgtatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttta 1155848  T
Q  158 nnnnnnnnnnt--cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
              |  | ||||||||||||||||| ||| |||||||||| ||| | |||||||| |||| |||||||||||||    
T  1155847 aaaaaaaaaattactttttgattttatcactgacctcttttcattcctagaaccgagcctccaaatttttagggacggccc 1155767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 76 - 238
Target Start/End: Complemental strand, 27314259 - 27314097
Alignment:
Q  76 cattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc-ttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgtttt 174  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||           ||||||    
T  27314259 cattttcacctctgagtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgtttt 27314161  T
Q  175 gattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||| | |||||||||||||    
T  27314160 gattttatcactggcctcttttcattcccagagtcgagcctccgaattttcagggacggccctg 27314097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 34397844 - 34398039
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| ||||| |||| |||||||||||| |||| |||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34397844 ttttggtgttaagtggaggttcctcatgtttacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaata 34397943  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    |||||||||||||||||||||           |||||||||||||||||||| || |||| | |||||||   ||| |||||||||||||||||||||    
T  34397944 taaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggtcttttttta-tcccagatgcgagtctccgaattcttagggacggc 34398039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 235362 - 235142
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatata--cgacaccttg 116  Q
    ||||| || |||| ||| ||||| |||| |||||||||| ||||||||||||||||||||||||| || ||||||||| | |||||||  || ||||||     
T  235362 agaattaggtcctcttgcttttggtgtt-ggtgggggtttctcatgtatacggtagtcattttcatctttgggtgtacggtatatatacccggcacctta 235264  T
Q  117 tatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctc 216  Q
    |||||||||||||||||||||||||||| ||||||| ||||           |||||||||||||||||||| || ||||||||| || ||| || ||||    
T  235263 tatttatcttttaaaaaatataaatagatcattgct-ttttaaaaaaaaatacgttttgattttatcactggtctcttttcattctcatagccgaacctc 235165  T
Q  217 cgaattcttagggacggccctgt 239  Q
    |||||||||||||| || |||||    
T  235164 cgaattcttagggatggtcctgt 235142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 6159442 - 6159538
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||||| || ||||||||||| |||| ||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6159442 ggttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaacattg 6159538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 2477686 - 2477590
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||||||||||||||| |||||||| | | |||||| |||||||||| | |||||||||||||||||||||||||| ||||| ||||||||    
T  2477686 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 2477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 20611794 - 20611889
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||||| |||||||||| ||| |||  || ||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  20611794 ggttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaatttaagtagaacatt 20611889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 21183777 - 21183686
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaa 145  Q
    |||||||||||||||||||||| ||||||| || |||||||||| ||||||||||  || |||||||||||||||||||||| |||||||||    
T  21183777 ggttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaatagaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 30121783 - 30121868
Alignment:
Q  71 gtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||| |||||||||| ||| |||| |||||||||| |||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  30121783 gtagtgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 4036953 - 4037031
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa 133  Q
    ||||||||| ||||||||||| || || |||| ||||||||||  ||||||||| |||||||||||||||| |||||||    
T  4036953 gttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 27994775 - 27994819
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgca 100  Q
    |||||||||||||||||||| |||||||||| || ||||||||||    
T  27994775 ttcctcatgtatacggtagtgattttcacctttgagtgtaccgca 27994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 19987148 - 19987209
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccg 98  Q
    ||||| |||||||||||| ||||| ||||||| ||||  ||||||||| | |||||||||||    
T  19987148 ttttggtgttaggtggggattccttatgtatatggtaaccattttcacatttgggtgtaccg 19987209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 19987277 - 19987330
Alignment:
Q  179 ttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    ||||||||| ||| |||||||||  ||||| || ||||||||||||||||||||    
T  19987277 ttatcactgacctcttttcattctgagagccgatcctccgaattcttagggacg 19987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 4505859 - 4506078
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  4505859 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgta 4505958  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  4505959 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 4506058  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  4506059 aattctcagggacggccctg 4506078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 6964972 - 6965186
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  6964972 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgta 6965071  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||          |  ||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  6965072 tttatcttttaaaaaatataaatagaacattgctctttt--aaaaaaaattattttgattttatcactggcctcttttcatttccagagccgagcctccg 6965169  T
Q  219 aattcttagggacggcc 235  Q
    |||||| ||||||||||    
T  6965170 aattctcagggacggcc 6965186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 12337585 - 12337363
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  12337585 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgta 12337486  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||          |   ||||||||||||||||||||| |||||||| ||||||| |||||| |    
T  12337485 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagccttc 12337386  T
Q  218 gaattcttagggacggccctgta 240  Q
    ||||||| |||||||||||||||    
T  12337385 gaattctcagggacggccctgta 12337363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 3155182 - 3155402
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3155182 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgta 3155281  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            ||||| |||||||||||| ||| ||||||||   | ||| |||||||||    
T  3155282 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttaattttatcactgacctcttttcatttttaaagccgagcctccg 3155381  T
Q  219 aattcttagggacggccctgt 239  Q
    |||||| ||||||||||||||    
T  3155382 aattctcagggacggccctgt 3155402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 29939999 - 29939781
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29939999 agaattagttcctcttgcttttggtgttaggtggtggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgta 29939900  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||| ||| |||| ||||||||||| |||||| ||    
T  29939899 tttatcttgtaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactgacctctttttattcccagagccgagccttcg 29939801  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||| ||||    
T  29939800 aattctcagggacggtcctg 29939781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 38 - 235
Target Start/End: Complemental strand, 10762683 - 10762488
Alignment:
Q  38 tttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat 137  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||  |||||| |||||||||||||||||||||    
T  10762683 tttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatat 10762584  T
Q  138 aaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    |||||||||||||||||||            |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10762583 aaatagaacattgctcttt--aaaaaaaaaacgttttaattttatcactggcctcttttcattcccagagctgagcctccaaattcttagggacggcc 10762488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 27 - 238
Target Start/End: Complemental strand, 8907208 - 8906996
Alignment:
Q  27 ttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctt 126  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||    
T  8907208 ttcctcttgattttggtgttaggtgggggtttctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatttatctt 8907109  T
Q  127 ttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattctt 225  Q
    ||||||||||||||||||||||| |||||||          |  |||||||||||||||||||||| ||||||||  |||||| |||||||||||||||     
T  8907108 ttaaaaaatataaatagaacattactcttttaaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctc 8907009  T
Q  226 agggacggccctg 238  Q
    ||| |||||||||    
T  8907008 aggaacggccctg 8906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 26716117 - 26716314
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt-aaaaaatataaat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||| |||||||||||||    
T  26716117 tgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaat 26716216  T
Q  142 agaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctgt 239  Q
    ||||||||||||||||           ||||||||||||||||||| ||| |||||||||||| ||| |||||  |||||||||||||||||||||||    
T  26716217 agaacattgctcttttaaaaaaaaatacgttttgattttatcactgacctcttttcattcccaaagccgagccaacgaattcttagggacggccctgt 26716314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 9046018 - 9046213
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt-aaaaaatataaat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  9046018 tgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaat 9046117  T
Q  142 agaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||| ||||||           ||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||| ||||||||||||    
T  9046118 agaacattgttcttttaaaaacaata-cgttttgattttatcactggcctcttttaattcccagagctgagccaacgaattctttgggacggccctg 9046213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 7162763 - 7162967
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||    
T  7162763 ttgattttggtgttaggtaggggttcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaa 7162862  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           | |||| |||||||||||||||| ||||||||||| ||||||||||| |||| ||| |||||||    
T  7162863 aatataaatagaacatcgctcttttaaaaaaaaga-cattttaattttatcactggcctcttttcattccccgagctgagccttcgaaatctcagggacg 7162961  T
Q  233 gccctg 238  Q
    ||||||    
T  7162962 gccctg 7162967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 27506859 - 27506659
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||| |||| |||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  27506859 ttttggtgttaggtgggagttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaata 27506760  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||| ||||||| ||||           ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||    
T  27506759 taaatagatcattgct-tttttttaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccc 27506661  T
Q  237 tg 238  Q
    ||    
T  27506660 tg 27506659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 24410401 - 24410623
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggg-gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgt 117  Q
    ||||| || |||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |    
T  24410401 agaattaggtcctcttgtttttggtgttaggtggggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttat 24410500  T
Q  118 atttatcttttaaaaaatataaatagaacattgctcttt--tnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcct 215  Q
    ||||||||||||||||||||||||||||||||| | |||              ||||||||||||||||||||||| |||||||||||| | | ||||||    
T  24410501 atttatcttttaaaaaatataaatagaacattgttttttaaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaaaccgagcct 24410600  T
Q  216 ccgaattcttagggacggccctg 238  Q
    |||||||||||||||||||||||    
T  24410601 ccgaattcttagggacggccctg 24410623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 40636164 - 40636317
Alignment:
Q  80 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | ||||||||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaatat-gttttgattt 40636262  T
Q  180 tatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  40636263 tatcactggcctcttttcattcccagagctgagcctccgaattctcagggacggc 40636317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 3952985 - 3953188
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  3952985 ttgattttggtgttaggtgggggttcctcatgcatacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatttatcttttaaaa 3953084  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| | |||||            | ||||||||||||||||| ||| |||||||| ||| ||| |||||||| |||||| |||||||    
T  3953085 aatataaatagaacatcggtcttt--aaaaaaaatacattttgattttatcactgacctcttttcatttccaaagccgagcctccaaattctcagggacg 3953182  T
Q  233 gccctg 238  Q
     |||||    
T  3953183 accctg 3953188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 34693991 - 34694155
Alignment:
Q  70 ggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntc 169  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  34693991 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-c 34694089  T
Q  170 gttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    |||||||||||||||| ||||| |||||||| ||||| | || |||||||||||| ||||||||||    
T  34694090 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34694155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 34716403 - 34716567
Alignment:
Q  70 ggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntc 169  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||           |    
T  34716403 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-c 34716501  T
Q  170 gttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    |||||||||||||||| ||||| |||||||| ||||| | || |||||||||||| ||||||||||    
T  34716502 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34716567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 5952791 - 5952642
Alignment:
Q  80 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattt 179  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||           |||||||||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa--ataaatataacattgctcttttaaaaaaaata-cgttttgattt 5952695  T
Q  180 tatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    ||||| |||||| |||||||||| ||||| || |||||||||||| |||||||    
T  5952694 tatcattggcctcttttcattccgagagccgaacctccgaattctcagggacg 5952642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 16097008 - 16097111
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| |||||| |||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  16097008 ggttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttc 16097107  T
Q  154 tttt 157  Q
    ||||    
T  16097108 tttt 16097111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 38400798 - 38400899
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||||| ||  |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  38400798 ggttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 38400897  T
Q  154 tt 155  Q
    ||    
T  38400898 tt 38400899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 24035645 - 24035544
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    |||||||||||| ||||||| |||||||||| | |||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  24035645 ttcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 24035546  T
Q  156 tt 157  Q
    ||    
T  24035545 tt 24035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 21665802 - 21665699
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||| | | | |||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||    
T  21665802 ggttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaaatagaacattgttc 21665703  T
Q  154 tttt 157  Q
    ||||    
T  21665702 tttt 21665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 28425812 - 28425709
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||| |||| |||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||  | |||||||||||||| ||    
T  28425812 ggttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaatttttaaatagaacattgttc 28425713  T
Q  154 tttt 157  Q
    ||||    
T  28425712 tttt 28425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 7742236 - 7742132
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa-aaaatataaatagaacattgct 152  Q
    ||||||||||| ||||| ||||  ||||||||| ||| |||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |    
T  7742236 ggttcctcatgcatacgatagtatttttcacctttggatgtaacgcatatatatgacacattgtatttatcttttaaaaaaatataaatagaacattgtt 7742137  T
Q  153 ctttt 157  Q
    |||||    
T  7742136 ctttt 7742132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 13800647 - 13800543
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctct-gggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgct 152  Q
    |||||||| ||||||  ||||| |||||||||| | ||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |    
T  13800647 ggttcctcgtgtatatagtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatttaaatagaacattgtt 13800548  T
Q  153 ctttt 157  Q
    |||||    
T  13800547 ctttt 13800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 12134142 - 12134039
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||| |||||||||||||| |||||||| | |||||||| ||||||||||||  |||||||||||||||||||||   | |||||||||||||| ||    
T  12134142 ggttcctaatgtatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaattttttaaatagaacattgttc 12134043  T
Q  154 tttt 157  Q
    ||||    
T  12134042 tttt 12134039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 16227470 - 16227368
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||| |||||||  ||||| ||||||| || | |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||    
T  16227470 ggttccttatgtatatagtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaaaattgttc 16227371  T
Q  154 ttt 156  Q
    |||    
T  16227370 ttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 8327674 - 8327801
Alignment:
Q  110 caccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagct 209  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||           |||||||||||||||||||  || |||||||| ||||| ||    
T  8327674 caccttatatttatcttttaaaaaatataaatagatcattgcttttttaaaaaaaata-cgttttgattttatcactgatctcttttcatttccagaact 8327772  T
Q  210 gagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||| |||||||||| ||||    
T  8327773 gagcctccgaatttttagggacggtcctg 8327801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 37182670 - 37182739
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttat 123  Q
    |||||||||||||||||||||| |||||||| | ||||||||  ||||||||||||||||||||||||||    
T  37182670 ggttcctcatgtatacggtagtgattttcacttttgggtgtattgcatatatacgacaccttgtatttat 37182739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 1396730 - 1396617
Alignment:
Q  125 ttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    |||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||  |||||||||||||||    
T  1396730 ttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagtcgagcctccgaattct 1396631  T
Q  225 tagggacggccctg 238  Q
     | ||| |||||||    
T  1396630 caaggaaggccctg 1396617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 42029168 - 42029247
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||||||| | |||||||  ||| |||| |||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  42029168 attttcacctttaggtgtacaacatgtatatgacaccttatatttatcttttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 11912859 - 11912757
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||| |||||||||||||| ||||||| || ||| ||||  ||||||||||| ||| |||||||||| ||||   |||| |||||||||||||| ||    
T  11912859 ggttccttatgtatacggtagtgattttcatctttggatgtattgcatatatacggcactttgtatttatttttttttaaatttaaatagaacattgttc 11912760  T
Q  154 ttt 156  Q
    |||    
T  11912759 ttt 11912757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 22727598 - 22727530
Alignment:
Q  60 tcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt 128  Q
    ||||||||| |||||| |||||||| | ||||||||||||||||||||| ||| | |||||||||||||    
T  22727598 tcatgtatatggtagtgattttcacttttgggtgtaccgcatatatacgtcacatagtatttatctttt 22727530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 11952643 - 11952588
Alignment:
Q  100 atatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||    
T  11952643 atatatacgacactttgtatt-atcttttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 10252468 - 10252511
Alignment:
Q  106 acgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||||||||||||| ||||| |||||||    
T  10252468 acgacaccttgtatttatcttttaaaaaatttaaattgaacatt 10252511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 22727497 - 22727456
Alignment:
Q  116 gtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttctttt 22727456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 2e-76; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 44655718 - 44655936
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44655718 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgta 44655817  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||||| || |||||||| ||||||| |||||||||    
T  44655818 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaattat-gttttgattttatcactggtctcttttcatttccagagccgagcctccg 44655916  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  44655917 aattctcagggacggccctg 44655936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 14146294 - 14146495
Alignment:
Q  36 attttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaat 135  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14146294 attttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaat 14146393  T
Q  136 ataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    ||||||||||||| ||||||||           ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||    
T  14146394 ataaatagaacatcgctcttttaaaaaaaata-cgttttgattttatcactggcctcttttcattccaagagccgagcctccgaattctcagggacggcc 14146492  T
Q  236 ctg 238  Q
    |||    
T  14146493 ctg 14146495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 5316657 - 5316877
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5316657 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 5316756  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||| |||||||||| |  |  ||||||||     
T  5316757 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcctaaggtcgagcctcca 5316855  T
Q  219 aattcttagggacggccctgta 240  Q
    |||||| |||||||||||||||    
T  5316856 aattctcagggacggccctgta 5316877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 5027532 - 5027747
Alignment:
Q  25 agttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc 124  Q
    ||||||| ||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  5027532 agttcctcttgcttttggtgttaggtgggggttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatc 5027631  T
Q  125 ttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattc 223  Q
    |||||||||||||||||||||||||||||||||          | ||||||||||||||||||||||| ||||||||||| |||  ||||||||||||||    
T  5027632 ttttaaaaaatataaatagaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattccccgagtcgagcctccgaattc 5027731  T
Q  224 ttagggacggccctgt 239  Q
    | ||||||||||||||    
T  5027732 tcagggacggccctgt 5027747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 23185404 - 23185622
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  23185404 agaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgta 23185503  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||| |||||| |||  |||| |||||||||    
T  23185504 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggcctcttttcaatcctcgagccgagcctccg 23185602  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| ||| |||||||||    
T  23185603 aattctcaggaacggccctg 23185622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 6771782 - 6771989
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6771782 ttgattttggtgttaggtggaggttcctcgtgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaa 6771881  T
Q  133 aatataaatagaacattgctcttt--tnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttaggga 230  Q
    |||||||||||||||| |||||||              ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||    
T  6771882 aatataaatagaacatcgctctttaaaaaaaaaaaacacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcaggga 6771981  T
Q  231 cggccctg 238  Q
    ||||||||    
T  6771982 cggccctg 6771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 19955694 - 19955914
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  ||||| ||    
T  19955694 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttata 19955793  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||| ||||||| ||||          |||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  19955794 tttatcttttaaaaaatataaatagatcattgct-ttttaaaaaaaaattcgttttgattttatcactggcctcttttcattctcagagccgagcctccg 19955892  T
Q  219 aattcttagggacggccctgta 240  Q
    ||||||||||||| ||||||||    
T  19955893 aattcttagggacagccctgta 19955914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 3406409 - 3406616
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||    
T  3406409 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaa 3406508  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           |||||| |||||||||||| ||| ||||||||||| ||||||||||||| |||||| ||||||     
T  3406509 aatataaatagaacatcgctcttttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggaca 3406608  T
Q  233 gccctgta 240  Q
    ||||||||    
T  3406609 gccctgta 3406616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 33 - 240
Target Start/End: Complemental strand, 3440411 - 3440204
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||    
T  3440411 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaa 3440312  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           |||||| |||||||||||| ||| ||||||||||| ||||||||||||| |||||| ||||||     
T  3440311 aatataaatagaacatcgctcttttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggaca 3440212  T
Q  233 gccctgta 240  Q
    ||||||||    
T  3440211 gccctgta 3440204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 17168951 - 17169151
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  17168951 ttttggtgttaggtaggggttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatttatcttttaaaaaata 17169050  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||||||||||| ||||           ||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  17169051 taaatagaacattgct-ttttttaaaaaaatacgttttgattttatcactgacctcttttcatttccagagccgagcctccgaattcttagggacggccc 17169149  T
Q  237 tg 238  Q
    ||    
T  17169150 tg 17169151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 50881407 - 50881621
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| || |||||| |||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  50881407 agaattagttcctcttaattttggtgttaggtggaggttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgta 50881506  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||             |||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  50881507 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaatag--attttaattttatcactggcctcttttcatttccagagccgagcctccg 50881604  T
Q  219 aattcttagggacggcc 235  Q
    |||||| ||||||||||    
T  50881605 aattctcagggacggcc 50881621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 16140046 - 16140244
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  16140046 ttgattttagtgttaggtggggattcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaa 16140145  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    ||||||||||||||||  |||||||           ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||    
T  16140146 aatataaatagaacatcactcttttaaaaaaaata-cgttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattctcagggacg 16140244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 4971754 - 4971536
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||    
T  4971754 agaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgta 4971655  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||||||||||||||||||           | ||||||||||||||||||| || ||||||||||| || | ||||||| |    
T  4971654 tttatcttttaaaaaatataaatagaacattgctctttaaaaaaaaatat-gttttgattttatcactggtctcttttcattccccgaaccgagcctcag 4971556  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||| ||||||    
T  4971555 aattctcagggacagccctg 4971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 9181141 - 9180922
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||    
T  9181141 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttata 9181042  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||| | |||            | |||| | |||||||| ||||| |||||||||||||||| |||||||||    
T  9181041 tttatcttttaaaaaatataaatagaacattgttttttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccg 9180942  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  9180941 aattcttagggacggccctg 9180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 9173141 - 9172940
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  9173141 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaata 9173042  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||||||||| | |||            | |||| | |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  9173041 taaatagaacattgttttttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccc 9172942  T
Q  237 tg 238  Q
    ||    
T  9172941 tg 9172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 40501908 - 40501707
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40501908 ttttggtgttaggtggaggttcttcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaata 40501809  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||| |||| || ||||           ||||||||||||||||||| ||| ||||||||| |||||  |||||||||||||||||||||||||||    
T  40501808 taaatagatcattactttttttttaaaaaatacgttttgattttatcactgacctcttttcattctcagagtcgagcctccgaattcttagggacggccc 40501709  T
Q  237 tg 238  Q
    ||    
T  40501708 tg 40501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 41697259 - 41697072
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| || |||||||||||||||||||    
T  41697259 ttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaa 41697160  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaat 221  Q
    |||||||||||||||| ||||||||           ||||||||||||||||||| ||| |||||||||||||||| |||| |||||||    
T  41697159 aatataaatagaacatcgctcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcccagagccgagcttccgaat 41697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 1366996 - 1366797
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  1366996 ttttggtgttaggtgggggttcctcgtgtatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 1366897  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||||||||||||  ||            ||||| | |||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||    
T  1366896 taaatagaacattgctc--ttaaaaaaaaatatgttttcaatttatcactggcctcttttcattcccagagctgagcctccaaattcgtagagacggccc 1366799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 27559638 - 27559752
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27559638 tgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaata 27559737  T
Q  143 gaacattgctctttt 157  Q
    |||||||||| ||||    
T  27559738 gaacattgctttttt 27559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 27906853 - 27906646
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             || |||||||||    
T  27906853 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtg------------gcggcaccttgta 27906766  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||| ||||||||  |||||| |||||||||    
T  27906765 tttatcttttaaaaaatataaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccg 27906666  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  27906665 aattctcagggacggccctg 27906646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 21741029 - 21740851
Alignment:
Q  63 tgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt--nnn 160  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||         
T  21741029 tgtatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctcttttaaaaa 21740930  T
Q  161 nnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctgt 239  Q
            | ||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | ||||||||||||    
T  21740929 aaaaaatacattttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcaaggacggccctgt 21740851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 51607567 - 51607358
Alignment:
Q  28 tcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatac-gacaccttgtatttatctt 126  Q
    |||| ||| ||||| | |||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| | |||||| ||||||||||    
T  51607567 tcctcttgcttttggtattagatgggagttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggccaccttatatttatctt 51607468  T
Q  127 ttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattctta 226  Q
    |||||||||||||||| ||||||  | ||||           ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||    
T  51607467 ttaaaaaatataaataaaacatt--ttttttttaaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattttta 51607370  T
Q  227 gggacggccctg 238  Q
    ||||||| ||||    
T  51607369 gggacggtcctg 51607358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 37 - 235
Target Start/End: Complemental strand, 13913600 - 13913401
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatata--cgacaccttgtatttatcttttaaaaaa 134  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||  || || ||| ||||||||||||||||||    
T  13913600 ttttggtgttaggtgggggtttctcatgtatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaa 13913501  T
Q  135 tataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    |||||||||| ||||||| ||||           | ||||||||||||||||||| | ||||||||| ||||||  ||||||||||||||||||||||||    
T  13913500 tataaatagatcattgct-tttttaaaaaaaatacattttgattttatcactggcatcttttcattctcagagccaagcctccgaattcttagggacggc 13913402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 6889634 - 6889805
Alignment:
Q  65 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 164  Q
    ||||||| | |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||           
T  6889634 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 6889733  T
Q  165 nnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
        ||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||| | | |||||||||||    
T  6889734 ta--cgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 6891480 - 6891651
Alignment:
Q  65 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 164  Q
    ||||||| | |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||           
T  6891480 tatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 6891579  T
Q  165 nnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
        ||||||||||||||||||| ||| ||||||||| |||| | ||||||||||||| | | |||||||||||    
T  6891580 ta--cgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6891651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 77 - 238
Target Start/End: Complemental strand, 22865538 - 22865378
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttga 176  Q
    |||||||||| ||||||||||| |||||||   || |||||||||||||||||||||||||||||||||||||||||||||           ||||||||    
T  22865538 attttcacctttgggtgtaccg-atatatagagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttgaaaaaaaatacgttttga 22865440  T
Q  177 ttttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||||| || ||| |||||||||||||||| | ||||||||||||| |||||||||||||    
T  22865439 ttttatcattgacctcttttcattcccagagccgtgcctccgaattctcagggacggccctg 22865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 38547137 - 38547035
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| | |||| |||||||| | |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  38547137 ggttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgatc 38547038  T
Q  154 ttt 156  Q
    |||    
T  38547037 ttt 38547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 45758506 - 45758609
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||||| ||| ||||   ||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||    
T  45758506 ggttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatagaacattgttc 45758605  T
Q  154 tttt 157  Q
    ||||    
T  45758606 tttt 45758609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 44895629 - 44895754
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||      |  || |||||| ||    
T  44895629 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtaatcattttcacctttgggtgtacc------acccgccaccttata 44895722  T
Q  119 tttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||||||||||||||||||| |||||    
T  44895723 tttatcttttaaaaaatataaatagatcattg 44895754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 59 - 157
Target Start/End: Original strand, 38853539 - 38853637
Alignment:
Q  59 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||| |||||||||| ||| | |||  |||||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||    
T  38853539 ctcatgtatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaacactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 39134824 - 39134720
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc-ttttaaaaaatataaatagaacattgct 152  Q
    |||||||||||||||| ||||| ||| |||||| ||||||||  ||||||||||  ||||||||||||||| ||||||||||| |||||||||||||| |    
T  39134824 ggttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaatagaacattgtt 39134725  T
Q  153 ctttt 157  Q
    |||||    
T  39134724 ctttt 39134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 43235871 - 43235774
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttt--taaaaaatataaatagaacatt 149  Q
    ||||||||||||||||| |||| |||||||||| |||||||||  ||||||||||||| |||||||||||||||   ||||||| |||||||||||||    
T  43235871 ggttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatttaaatagaacatt 43235774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 26803960 - 26804059
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||| ||||||||||||||||| ||||||||||    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||| | ||||| ||    
T  26803960 ggtttctcatgtatacggtagtgattttcacctt---gtgtatcgcatatatacgacatcttgtatttatcttttaaaaaatttaaatatagcattgttc 26804056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 33170771 - 33170867
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||| ||||||||||||||||| |||||||||  | |||||||||||||||||| |||| |||||||||  ||||||||||| |||||| |||||||    
T  33170771 ggtttctcatgtatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatttacgttttaaaaaatttaaatataacattg 33170867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 5533326 - 5533428
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt-aaaaaatataaatagaacattgctct 154  Q
    |||||||||||||||||||| |||||||||| ||  |||||  |||||||||| |||||||| |||||||||| ||||||| ||||||||| |||| |||    
T  5533326 ttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaatagaatattgttct 5533425  T
Q  155 ttt 157  Q
    |||    
T  5533426 ttt 5533428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 17322684 - 17322621
Alignment:
Q  94 taccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||  || |||||||||||||| |||||||||||||||||||||| ||||||    
T  17322684 taccgcatatatacgctacattgtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 50146308 - 50146411
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||| |||| | ||||| |||| ||||| || | |||||| ||| ||||||| |||||||||| ||||| | |||||||||||||| ||    
T  50146308 ggttcctcatgtatagggtaatgatttttacctttgggtctatcacatatacacggcaccttgcatttatctttcaaaaagtttaaatagaacattgttc 50146407  T
Q  154 tttt 157  Q
    ||||    
T  50146408 tttt 50146411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 6221690 - 6221791
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||| |||||| || | |||||||| | | | |||||||| |||||||| ||| ||||||||||||||| |||||| |||||||||||||| ||    
T  6221690 ggttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatctttt-aaaaatttaaatagaacattgttc 6221788  T
Q  154 ttt 156  Q
    |||    
T  6221789 ttt 6221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 35392295 - 35392376
Alignment:
Q  67 tacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||| |||||||||| ||| | ||||||||||||||| |||||||||||||||  ||||||||| |||||| ||||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacatt 35392376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 34247153 - 34247208
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    ||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||    
T  34247153 cgttttgattttatcactgaccttttttcatttccagagccgagcctccgaattct 34247208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 10926052 - 10925951
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaa-atataaatagaacattgctctt 155  Q
    ||||||||||||||||||| ||||||| || ||| || | | |||||||||| ||| |||||||||| ||||||||| |  ||||||||| |||| ||||    
T  10926052 tcctcatgtatacggtagtgattttcatctttggatgcatctcatatatacggcacattgtatttattttttaaaaatacttaaatagaatattgttctt 10925953  T
Q  156 tt 157  Q
    ||    
T  10925952 tt 10925951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 34247025 - 34247106
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacg 108  Q
    ||||| ||||| | ||||||||| |||||||||||||||||        |||||||||||||||| |||| |||||||||||||||||||    
T  34247025 agaattagttcatcttgattttggtgttaggtgggggttcc--------acggtagtcattttcatctcttggtgtaccgcatatatacg 34247106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 142; Significance: 5e-74; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 106513 - 106724
Alignment:
Q  28 tcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttt 127  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  106513 tcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttt 106612  T
Q  128 taaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttag 227  Q
    ||||||||||||||||||||||| ||||||           ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  106613 taaaaaatataaatagaacattgttcttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccaaattcttag 106712  T
Q  228 ggacggccctgt 239  Q
    ||||||||||||    
T  106713 ggacggccctgt 106724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 5e-74; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 34756500 - 34756289
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34756500 agaattagttcctcttgattttgttgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 34756401  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  34756400 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 34756301  T
Q  219 aattcttaggga 230  Q
    |||||| |||||    
T  34756300 aattctcaggga 34756289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 9364257 - 9364476
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||    
T  9364257 agaattaggtcctcttgcttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttata 9364356  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||| ||             ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9364357 tttatcttttaaaaaatataaatagaacattgcttttaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagctgagcctccg 9364456  T
Q  219 aattcttagggacggccctg 238  Q
    |||||||||||  |||||||    
T  9364457 aattcttaggggtggccctg 9364476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16198928 - 16198709
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||    
T  16198928 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttata 16198829  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||| |||            ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  16198828 tttatcttttaaaaaatataaatagaacattgctttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccg 16198729  T
Q  219 aattcttagggacggccctg 238  Q
    |||||||||||| |||||||    
T  16198728 aattcttagggaaggccctg 16198709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 38869497 - 38869279
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  38869497 agaattaggtcctcttgcttttggtgttaggtgggggtttctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttata 38869398  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||| |||| ||| |||||||||||||||| |||||||||    
T  38869397 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttataactgacctcttttcattcccagagccgagcctccg 38869299  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  38869298 aattcttagggacggccctg 38869279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 2274870 - 2275070
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  2274870 ttgattttggtgttaggtgggggttcctcgtgtatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatttatcttttaaaa 2274969  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||    
T  2274970 aatataaatagaacatcgctcttttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagaaccgagcctccgaattctcagggacg 2275069  T
Q  233 g 233  Q
    |    
T  2275070 g 2275070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16592208 - 16591990
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16592208 agaattagttcctcttgattttggtgttaggtgggggttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgta 16592109  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||| |||||||||||||||||||||||||||          | ||||||||||||||| |||||| ||||||||| |||||| ||||||||     
T  16592108 tttatcttttagaaaatataaatagaacattgctcttttaaaaaaaatat-gttttgattttatcattggcctcttttcattctcagagccgagcctcca 16592010  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| | |||||||||||    
T  16592009 aattctcaaggacggccctg 16591990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 27078994 - 27079197
Alignment:
Q  36 attttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaat 135  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27078994 attttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaat 27079093  T
Q  136 ataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggc 234  Q
    ||||||||||||||||||||||          | ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||    
T  27079094 ataaatagaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcagggacggc 27079193  T
Q  235 cctg 238  Q
    ||||    
T  27079194 cctg 27079197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 15480209 - 15480006
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15480209 ttgattttggtgttaggtgggggttcctcatgcatacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatttatcttttaaaa 15480110  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| | |||||             |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  15480109 aatataaatagaacatcggtctttaaaaaaaatat--gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacg 15480012  T
Q  233 gccctg 238  Q
    ||||||    
T  15480011 gccctg 15480006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 19523179 - 19523380
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19523179 ttgattttggtgttaggtgggggttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaa 19523278  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||  |||||||            |||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |||||||    
T  19523279 aatataaatagaacaccgctctttaaaaaaaaaacacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattctcagggacg 19523378  T
Q  233 gc 234  Q
    ||    
T  19523379 gc 19523380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 36187996 - 36187795
Alignment:
Q  36 attttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaat 135  Q
    |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36187996 attttggtgttaggtggaggtttctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaat 36187897  T
Q  136 ataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    ||||||||||||| ||||||||           ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  36187896 ataaatagaacatcgctcttttaaaaaaaaaa-cgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggcc 36187798  T
Q  236 ctg 238  Q
    |||    
T  36187797 ctg 36187795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 30854296 - 30854511
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||    
T  30854296 agaattagttcctctt-attttggtgttaggtgggggttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgta 30854394  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||| |||||||| ||| ||| |||||||||||||||| ||||||||     
T  30854395 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatacgttttaattttatcgctgaccttttttcattcccagagccgagcctcca 30854494  T
Q  219 aattcttagggacggcc 235  Q
    |||| | ||||||||||    
T  30854495 aattatcagggacggcc 30854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 22986658 - 22986473
Alignment:
Q  53 gggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgct 152  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  22986658 gggtttctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatttgtcttttaaaaaatattaatagaacattgct 22986559  T
Q  153 cttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||           ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||    
T  22986558 cttttaaaaaaaattacgttttgattttatcactggcctcttttcattctcagagctgagcctccgaattctcacggacggccctg 22986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16799461 - 16799240
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||    
T  16799461 agaattaggtcctcttgcttttggtgttatgtgggggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttata 16799362  T
Q  119 tttatcttttaaaaaatataaatagaaca-ttgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctc 216  Q
    ||||| ||||||||||||||||||||||| || |||||||          | ||||||||||||||||||| | | |||||||||||||||| |||||||    
T  16799361 tttattttttaaaaaatataaatagaacatttactcttttaaaaaaaaaatacgttttgattttatcactgacatcttttcattcccagagccgagcctc 16799262  T
Q  217 cgaattcttagggacggccctg 238  Q
    ||||||||||||||||||||||    
T  16799261 cgaattcttagggacggccctg 16799240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 28822476 - 28822253
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||    
T  28822476 agaattaggtcctcttgcttttggtgttaggtgggggttcatcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttata 28822377  T
Q  119 tttatcttttaaaaaatataaatagaacattgctctttt-----nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagc 213  Q
    |||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||  ||| |||||||||||| ||| || |    
T  28822376 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaaaaaaatacgttttgattttatcactaacctcttttcattcccaaagccgaac 28822277  T
Q  214 ctccgaattcttagggacggccct 237  Q
    ||||||||||||||||||||||||    
T  28822276 ctccgaattcttagggacggccct 28822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 31194706 - 31194528
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31194706 cctcatgtatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 31194608  T
Q  158 nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
               |||||||||||||||||||| || |||||||||||||||| ||||||||||||| | |||||||||||||    
T  31194607 aaaagaaata-cgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 31194528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 27924048 - 27924267
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||    
T  27924048 agaattaggtccttttgcttttggtgttaggcgggcgttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttata 27924147  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||  ||||||| ||||           ||||||||||||||||||||||| ||||||||| |||||  ||||| |||    
T  27924148 tttatcttttaaaaaatataaataggtcattgcttttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagtcgagcccccg 27924247  T
Q  219 aattcttagggacggccctg 238  Q
    |||||||||  |||||||||    
T  27924248 aattcttagaaacggccctg 27924267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 7670890 - 7671119
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||| ||    
T  7670890 agaattaggtcctcttgcttttggtgttaggtggggatacctcatgtatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttata 7670989  T
Q  119 tttatctttt-aaaaaatataaatagaacattgctctttt--------nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagct 209  Q
    |||||||||| |||||||||||||||||||||||| ||||                   ||||||||||||||||||||||| ||||||||||||||||     
T  7670990 tttatcttttaaaaaaatataaatagaacattgctttttttttttaaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagcc 7671089  T
Q  210 gagcctccgaattcttagggacggccctgt 239  Q
    ||||||||||||||||| ||||||||||||    
T  7671090 gagcctccgaattcttaaggacggccctgt 7671119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 40389646 - 40389537
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40389646 tgttaggtgggggttcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaata 40389547  T
Q  143 gaacattgct 152  Q
    ||||||||||    
T  40389546 gaacattgct 40389537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 23284164 - 23284058
Alignment:
Q  51 gggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  23284164 gggggttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtctttaaaaaatataaatagaacattg 23284065  T
Q  151 ctctttt 157  Q
    |||||||    
T  23284064 ctctttt 23284058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 7338021 - 7338170
Alignment:
Q  75 tcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgtttt 174  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||    
T  7338021 tcattttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttaaaaaaaaaaaacgtttt 7338120  T
Q  175 gattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    |||||||||  || ||| |||||||||| ||||| |||||||| ||||||    
T  7338121 gattttatccttgacctcttttcattcctagagccgagcctccaaattct 7338170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 31881528 - 31881348
Alignment:
Q  58 cctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||| ||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31881528 cctcatgtatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T
Q  158 -nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
                |||||||||||||| |||| ||  |||||||||||||||| |||||||  |||| | |||||||||||||    
T  31881429 aaaaaaaaaaaacgttttgattttattactgaccacttttcattcccagagccgagcctctaaattttcagggacggccctg 31881348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 36868973 - 36868872
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    |||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  36868973 ttcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaattaaatagaacattgttctt 36868874  T
Q  156 tt 157  Q
    ||    
T  36868873 tt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 14318484 - 14318382
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||  | ||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  14318484 ggttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 14318385  T
Q  154 ttt 156  Q
    |||    
T  14318384 ttt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 2530996 - 2530901
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||| ||||| |||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  2530996 ggttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaatagaacatt 2530901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 26719045 - 26718953
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||| ||||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  26719045 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 26988789 - 26988697
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||| ||||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  26988789 tcctcatgtatgcggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26988697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 1366625 - 1366522
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||| ||||||||||| |||||||| | | |||||| ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||    
T  1366625 ggttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaatagaacattgttc 1366526  T
Q  154 tttt 157  Q
    ||||    
T  1366525 tttt 1366522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 33037781 - 33037884
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||| |  ||||||||| |||||||||  ||||||||||| | ||||||||||||||||||||||| |||||| ||||||| ||    
T  33037781 ggttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataaaacattgttc 33037880  T
Q  154 tttt 157  Q
    ||||    
T  33037881 tttt 33037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 2412089 - 2412191
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||| ||||| |||||||| | ||| || | |||||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||    
T  2412089 ggttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaatttaaatagaacattgttc 2412188  T
Q  154 ttt 156  Q
    |||    
T  2412189 ttt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 2024738 - 2024638
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||||||||| |||||| ||||||| || |||||||| | |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||||    
T  2024738 tcctcatgtatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaatttaaatagaacattgttcttt 2024639  T
Q  157 t 157  Q
    |    
T  2024638 t 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 34425904 - 34426007
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||| | ||||| | || | |||||| | |||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||    
T  34425904 ggttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattgaaatagaacattgttc 34426003  T
Q  154 tttt 157  Q
    ||||    
T  34426004 tttt 34426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 24395741 - 24395835
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||| |||||||| || |||||||||| ||| ||||  | |||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  24395741 gttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 10407464 - 10407565
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    ||||||||| |||||||||| |||||||| | | | |||||  ||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||    
T  10407464 ttcctcatgcatacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctt 10407563  T
Q  156 tt 157  Q
    ||    
T  10407564 tt 10407565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 22648824 - 22648734
Alignment:
Q  65 tatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    ||||| ||||| ||| |||||| ||| ||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  22648824 tatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatagaacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 41911716 - 41911614
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||| |||||| |||| ||||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||  ||| | |||||||| ||    
T  41911716 ggttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaaaattaagttgaacattgttc 41911617  T
Q  154 ttt 156  Q
    |||    
T  41911616 ttt 41911614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 10543682 - 10543769
Alignment:
Q  62 atgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||| |||||||||| ||| |||| |||||||||||  |||||| ||||||||||||||||||| ||| | |||||||    
T  10543682 atgtatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaatttaagtggaacatt 10543769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 11242417 - 11242314
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||| || || ||| |||| | |||||||||  ||  |||||||||||||||||||||  |||||||||||||| ||    
T  11242417 ggttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaattaaatagaacattgttc 11242318  T
Q  154 tttt 157  Q
    ||||    
T  11242317 tttt 11242314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 23284012 - 23283943
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||||||||||||| |||||||||| | | ||||||||| ||||||| |||||||||||||    
T  23284012 cgttttgattttatcactggcctcttttcattcctaaaactgagcctctgaattctcagggacggccctg 23283943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 40794426 - 40794323
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||| ||||||||||||||||| |||||||||| | |||||| |  |||| |||| | | |||||||| ||||||||||||| |||||| ||||||| ||    
T  40794426 ggtttctcatgtatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaataaaacattgttc 40794327  T
Q  154 tttt 157  Q
    ||||    
T  40794326 tttt 40794323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 606209 - 606258
Alignment:
Q  108 gacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  606209 gacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 40389518 - 40389461
Alignment:
Q  173 ttgattttatcactggcctattttcattcccagagctgagcctccgaattcttaggga 230  Q
    ||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||    
T  40389518 ttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttaggga 40389461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 15639644 - 15639724
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaa 134  Q
    ||||||| |||||||||  ||| ||||||| || ||| |||| |||||||||||| |||||||||||||||||| ||||||    
T  15639644 ggttccttatgtatacgacagtgattttcatctttggatgtatcgcatatatacgtcaccttgtatttatctttaaaaaaa 15639724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 17344969 - 17345053
Alignment:
Q  66 atacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||| ||||| | || ||||||||||||||||| | |||| |||||||||||  | |||||||| ||||||||||||||    
T  17344969 atacggtagtaatttttatctttgggtgtaccgcatatacatgacatcttgtatttattatataaaaaatttaaatagaacattg 17345053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 27530543 - 27530587
Alignment:
Q  113 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||    
T  27530543 cttgtattaatcttttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 1e-71; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 45475783 - 45476001
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  45475783 agaattagttcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgta 45475882  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  45475883 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggcctcttttcattccccgagccgagcctccg 45475981  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| ||||| |||||||    
T  45475982 aattctcagggatggccctg 45476001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 2952358 - 2952137
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  2952358 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgta 2952259  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt--cgttttgattttatcactggcctattttcattcccagagctgagcctc 216  Q
    |||||||||||||||||||||||||||||||||||||||          |   |||||||||||||||||||||| |||||||| ||||||| |||||||    
T  2952258 tttatcttttaaaaaatataaatagaacattgctctttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctc 2952159  T
Q  217 cgaattcttagggacggccctg 238  Q
    |||||||| |||||||||||||    
T  2952158 cgaattctcagggacggccctg 2952137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 30883295 - 30883512
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  30883295 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgta 30883394  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||          |  |||||||||||||||||||||| |||||||| ||||||| |||||||     
T  30883395 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctct 30883494  T
Q  218 gaattcttagggacggcc 235  Q
    ||||||| ||||||||||    
T  30883495 gaattctcagggacggcc 30883512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 13534823 - 13534609
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13534823 agaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgta 13534725  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  13534724 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggcctcttttcattcccagagccgagcctccg 13534626  T
Q  219 aattcttagggacggcc 235  Q
    |||| | ||||||||||    
T  13534625 aattttcagggacggcc 13534609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 13624363 - 13624149
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13624363 agaattagtttctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgta 13624265  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  13624264 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggcctcttttcattcccagagccgagcctccg 13624166  T
Q  219 aattcttagggacggcc 235  Q
    |||| | ||||||||||    
T  13624165 aattttcagggacggcc 13624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 23606766 - 23606548
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||    
T  23606766 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttata 23606667  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||| || |||||||||||||||| |||||||||    
T  23606666 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactggtctcttttcattcccagagccgagcctccg 23606568  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  23606567 aattcttagggacggccctg 23606548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 37430281 - 37430076
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  37430281 ttgattttggtgttacgtgagggttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaa 37430182  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  37430181 aatataaatagaacatcgctcttttaaaaaaaaaaacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacg 37430082  T
Q  233 gccctg 238  Q
    ||||||    
T  37430081 gccctg 37430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 23798398 - 23798179
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||    
T  23798398 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttata 23798299  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||||||||||||||||||            |||||||||||||||| || ||| ||||| |||||||||| |||||||||    
T  23798298 tttatcttttaaaaaatataaatagaacattgctctttaaaaaaaatatacgttttgattttatcattgacctcttttcgttcccagagccgagcctccg 23798199  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  23798198 aattcttagggacggccctg 23798179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3048654 - 3048435
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  3048654 agaattagttcctcttgattttggtgttaggtgagggttcctcgtgtatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgta 3048555  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||||| | |||||||||||            |||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  3048554 tttatcttttaaaaaatataaatagtatattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccg 3048455  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| || ||||||||||    
T  3048454 aattctcagagacggccctg 3048435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 42600766 - 42600967
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  42600766 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaata 42600865  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||| ||||||| ||||           ||||||||||||||||||| ||| ||||||||  |||||| |||||||||||||||||||||||||||    
T  42600866 taaatagatcattgcttttttaaaaaaaaaaacgttttgattttatcactgacctcttttcattttcagagccgagcctccgaattcttagggacggccc 42600965  T
Q  237 tg 238  Q
    ||    
T  42600966 tg 42600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 41879147 - 41879364
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||  ||||||||    
T  41879147 agaattagttcctcttgattttggtgttaggtgggggtttctcatgtattcggtagtcattttcacctttggatgtaccgcatatatacggtaccttgta 41879246  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||| ||||||           |||||| |||||||||||  ||| |||||||||||||||| |||||| ||    
T  41879247 tttatcttttaaaaaatataaatagaacattgttcttttaaaaaaata--cgttttaattttatcactaacctcttttcattcccagagccgagccttcg 41879344  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  41879345 aattctcagggacggccctg 41879364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 10917375 - 10917576
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  10917375 ttttggtgttaggtgggggttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 10917474  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    |||||||| ||||| | ||||           ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||| ||||    
T  10917475 taaatagatcattg-ttttttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttaaggacagccc 10917573  T
Q  237 tgt 239  Q
    |||    
T  10917574 tgt 10917576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 5860881 - 5860744
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5860881 agaattagttcctcttgattttggtgttaggttggggtttctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 5860782  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5860781 tttatcttttaaaaaatataaatagaacattgctcttt 5860744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 5973209 - 5973106
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||| ||||||||||| | ||||||| || |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  5973209 ggttcctcgtgtatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 5973110  T
Q  154 tttt 157  Q
    ||||    
T  5973109 tttt 5973106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 7944624 - 7944521
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||||| |||||||||  |||||||||| |||||||||||||| ||||||||||| |||||| ||||||| ||    
T  7944624 ggttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataaaacattgttc 7944525  T
Q  154 tttt 157  Q
    ||||    
T  7944524 tttt 7944521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 11290185 - 11290288
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||| ||||||||||||||||| |||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||    
T  11290185 ggttgctcatgtatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaataaaacattgttc 11290284  T
Q  154 tttt 157  Q
    ||||    
T  11290285 tttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 39332507 - 39332405
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||||||||||||||||| |||||||||| ||| |||||||| |||||| ||||||||||||||||||||| |||||  |||||||||||||| ||    
T  39332507 ggttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaatagaacattgttc 39332408  T
Q  154 ttt 156  Q
    |||    
T  39332407 ttt 39332405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 5942697 - 5942777
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaa 134  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  5942697 ggttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 8102913 - 8103008
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||| | |||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||| |||||| ||||||    
T  8102913 ggttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacatt 8103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 15167517 - 15167414
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||||| |||| |||||||| | |||||||| ||||||||||| |||| || ||||||||||||||||||| |||||||||||||| ||    
T  15167517 ggttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaatagaacattgttc 15167418  T
Q  154 tttt 157  Q
    ||||    
T  15167417 tttt 15167414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 41677276 - 41677172
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa-aaaatataaatagaacattgct 152  Q
    |||||||||||||||| ||||| |||||||||| | | |||| ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |    
T  41677276 ggttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaatttaaatagaacattgtt 41677177  T
Q  153 ctttt 157  Q
    |||||    
T  41677176 ctttt 41677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 34789959 - 34789861
Alignment:
Q  59 ctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||| |||||||||| |||||||||  ||||||||||||| |||||||||||||||||| | || |||||||||||| | ||||||    
T  34789959 ctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatagaacatcgttctttt 34789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 8646215 - 8646309
Alignment:
Q  62 atgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||| |||||||| | || |||||  |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8646215 atgtatacggtagtgattttcacatttgcgtgtat-gcatatatacgataccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 8646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 5721560 - 5721654
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacat 148  Q
    ||||||||| |||||||||||| |||||||| | |||||||||||  |||||| | |||||||||||||||||||||||||  ||||||||||||    
T  5721560 ggttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaattaaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 15078759 - 15078854
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||||||||| |||| |||||||| | ||||||||  ||||||||||  |||||| ||||||||||||||||| | |||||||||||||    
T  15078759 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 15078854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 30674482 - 30674403
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    |||||||||| || ||||| ||||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||    
T  30674482 attttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttcttt 30674403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 20003797 - 20003728
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||||    
T  20003797 cgttttgattttatcactggcctcttttcattccccgagccgagcctccaaattctcagggacggccctg 20003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 14510084 - 14509983
Alignment:
Q  54 ggttcctcatgtatacggtagtcatttt-cacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgct 152  Q
    |||| ||||||||||||||||| ||||| ||| | |||||||||||  ||||||||||||||| ||||| ||||||||||||| ||||| |||||||| |    
T  14510084 ggttactcatgtatacggtagtgatttttcacatttgggtgtaccg--tatatacgacaccttatatttgtcttttaaaaaatttaaattgaacattgtt 14509987  T
Q  153 cttt 156  Q
    ||||    
T  14509986 cttt 14509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 25561595 - 25561502
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||| ||| |||||||| | ||||| || |||||||||||| ||||||||||||||| ||||||| || |||||||||||||    
T  25561595 ggttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatc-tttaaaagatttaaatagaacatt 25561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 23941170 - 23941097
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||||| || |||||||| ||| |||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  23941170 attttcatctttgggtgtatcgcttatatatgacaccttgtatttatcttttaaaaaatttaaataaaacattg 23941097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 34048806 - 34048705
Alignment:
Q  57 tcctcatgtatacggtagtcattttcacctctgggtgtacc--gcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 154  Q
    ||||||||||||| ||||| ||||||| || |||||||| |    ||||||||||||| |||||||||||||||||||  | |||||||||||||| |||    
T  34048806 tcctcatgtatacagtagtgattttcatctttgggtgtatcatatatatatacgacacattgtatttatcttttaaaatgtttaaatagaacattgttct 34048707  T
Q  155 tt 156  Q
    ||    
T  34048706 tt 34048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 9108551 - 9108596
Alignment:
Q  111 accttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||    
T  9108551 accttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 34868223 - 34868184
Alignment:
Q  110 caccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34868223 caccttgtatttatcttttaaaaaatttaaatagaacatt 34868184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 38009203 - 38009151
Alignment:
Q  105 tacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||| || ||||||||||||||||| | |||||||||||||| ||||||    
T  38009203 tacgacacgttatatttatcttttaaaaattttaaatagaacattgttctttt 38009151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 5860728 - 5860674
Alignment:
Q  170 gttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    ||||||||||||||| || ||| |||||||| ||||||| |||||||| ||||||    
T  5860728 gttttgattttatcattgacctcttttcatttccagagccgagcctccaaattct 5860674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 1e-71; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 34027550 - 34027768
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||    
T  34027550 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttata 34027649  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||| ||||           ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  34027650 tttatcttttaaaaaatataaatagaacattgct-ttttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccg 34027748  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  34027749 aattcttagggacggccctg 34027768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 32915370 - 32915576
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  32915370 ttgattttggtgttaggtgggggttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaa 32915469  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||||||||||| ||||||||           ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||    
T  32915470 aatataaatagaacatcgctcttttaaaaaaaaaaccgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacg 32915569  T
Q  233 gccctgt 239  Q
    |||||||    
T  32915570 gccctgt 32915576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 54780772 - 54780969
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  54780772 tgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaata 54780871  T
Q  143 gaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctgt 239  Q
    |||||||||||||||          | ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| ||||||||||||||    
T  54780872 gaacattgctcttttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccaagcctccgaattctcagggacggccctgt 54780969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 32128555 - 32128774
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  32128555 agaattaggtcctcttgcttttggtgttaggtgggggtttcttatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttata 32128654  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||| |||||||||||||||| ||||||||     
T  32128655 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatacgttttgattttatcactgaccttttttcattcccagagccgagcctcca 32128754  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  32128755 aattcttagggacggccctg 32128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 34768710 - 34768492
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||    
T  34768710 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttata 34768611  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||          | ||||||||||||||||| |||| |||||||||||| ||| |||||||||    
T  34768610 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaatat-gttttgattttatcactagcctcttttcattcccaaagccgagcctccg 34768512  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| ||||||| |||||    
T  34768511 aattctcagggacgaccctg 34768492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 47128958 - 47129172
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  47128958 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgta 47129057  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||| ||||||           | ||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  47129058 tttatcttttaaaaaatataaatagaacattgttcttttaaaaaaaata-cattttgattttatcactggcctcttttcatttccagagccgagcctccg 47129156  T
Q  219 aattcttagggacggc 234  Q
    |||||| |||||||||    
T  47129157 aattctcagggacggc 47129172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10978871 - 10979092
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10978871 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgta 10978970  T
Q  119 tttatcttttaaaaaatataaatagaacattgctctttt--nnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctc 216  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||  ||| ||||||||||||||||| | ||||    
T  10978971 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaaaatacgttttgattttatcactaacctcttttcattcccagagctaaacctc 10979070  T
Q  217 cgaattcttagggacggccctg 238  Q
    |||||||| || ||||||||||    
T  10979071 cgaattctcagagacggccctg 10979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 38209727 - 38209522
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38209727 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgta 38209628  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||| |||||||| ||||||| ||||||||     
T  38209627 tttatcttttaaaaaatataaatagaacattgctctttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagcctcca 38209528  T
Q  219 aattct 224  Q
    ||||||    
T  38209527 aattct 38209522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 2790851 - 2790659
Alignment:
Q  45 ttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaataga 144  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  2790851 ttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaataga 2790752  T
Q  145 acattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||| ||||||          | ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||    
T  2790751 acattgttcttttaaaaaaaaaat-gttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagagacggccctg 2790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 43455643 - 43455460
Alignment:
Q  43 tgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  43455643 tgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaata 43455544  T
Q  143 gaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttag 227  Q
    |||||||||||||||           ||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  43455543 gaacattgctcttttaaaaataata-cgttttgattttatcactgacctcttttcattcccagagtcgagcctccgaattcttag 43455460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 37777341 - 37777140
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37777341 ttttggtgttagttgagggttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaata 37777242  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccc 236  Q
    ||||||||||||| || ||||           ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||    
T  37777241 taaatagaacattactttttttttaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaatttttagggacagccc 37777142  T
Q  237 tg 238  Q
    ||    
T  37777141 tg 37777140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 48209211 - 48209436
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||| | ||||||||| ||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||    
T  48209211 agaattagttcttcttgattttggtgttaggtgggggtttctcatgtatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgta 48209310  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgat-----tttatcactggcctattttcattcccagagctgag 212  Q
    |||||||||||||||||||||||||||||||||||||||          | |||||||||     ||||||||||| || |||||| ||||||||| |||    
T  48209311 tttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaaatacgttttgattttaatttatcactggtctcttttcactcccagagccgag 48209410  T
Q  213 cctccgaattcttagggacggccctg 238  Q
    |||||||||||| |||||||||||||    
T  48209411 cctccgaattctcagggacggccctg 48209436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 33 - 239
Target Start/End: Original strand, 37514644 - 37514849
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  37514644 ttgattttggtgttaggtggggattcttcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaa 37514743  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggac 231  Q
    |||||||||||||||| |||||||           | ||||||||||||||||||||||| |||||||||||   ||||||||||| |||||| ||||||    
T  37514744 aatataaatagaacatcgctctttaaaaaaaaaaatacgttttgattttatcactggcctcttttcattccc--cgctgagcctccaaattctcagggac 37514841  T
Q  232 ggccctgt 239  Q
    ||||||||    
T  37514842 ggccctgt 37514849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 16845010 - 16845211
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt-aaaaaat 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||| |||||||||||| |||||||    
T  16845010 ttttggtgttaggtgggggttcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatttatcttttaaaaaaat 16845109  T
Q  136 ataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggcc 235  Q
    ||||||||||||||||||||||           |||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||    
T  16845110 ataaatagaacattgctcttttaaaaaaaata-cgttttgattttatcactgg-cttttttcatttccagagccgagcctccgaattcttagggacggcc 16845207  T
Q  236 ctgt 239  Q
    ||||    
T  16845208 ctgt 16845211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 5128964 - 5128758
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  5128964 ttgattttggtgttaggtggaggttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaa 5128865  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgtttt-gattttatcactggcctattttcattcccagagctgagcctccgaattcttagggac 231  Q
    ||||||||||||| || |||||| |           |||||| ||||||||||||||||| |||||||||||||||| |||||||  |||||| ||||||    
T  5128864 aatataaatagaatatcgctcttctaaaaaaaaaaacgttttagattttatcactggcctcttttcattcccagagccgagcctctaaattctcagggac 5128765  T
Q  232 ggccctg 238  Q
    |||||||    
T  5128764 ggccctg 5128758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 33 - 234
Target Start/End: Original strand, 1105517 - 1105717
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaa 132  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  1105517 ttgattttggtgttaggtgggggttgctcatgtatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatttatcttttaaaa 1105616  T
Q  133 aatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    ||||||||||||||||  |||||||           ||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||| | |||||    
T  1105617 aatataaatagaacatcactcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcccagagccgagcctctgaattctcaaggacg 1105715  T
Q  233 gc 234  Q
    ||    
T  1105716 gc 1105717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 19498475 - 19498691
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||  ||||||| |||||| ||    
T  19498475 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacagtagtcattttcacctttggctgtaccgc--atatacggcaccttata 19498572  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||||||||||||||||           |||||||||||||||| |||||| |||||||||| ||||| |||||||||    
T  19498573 tttatcttttaaaaaatataaatagaacattgctcttttaaacaaaata-cgttttgattttatcattggcctgttttcattcctagagccgagcctccg 19498671  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||| ||||||||||    
T  19498672 aattcttagtgacggccctg 19498691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 54083378 - 54083160
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||| |||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||| ||    
T  54083378 agaattaggtcctcttgcttttggtgttaggtaggggttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttata 54083279  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    |||||||||||||||||||||||||| ||||| | ||||           ||||||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  54083278 tttatcttttaaaaaatataaatagatcattg-ttttttttaaaaaaatacgttttgattttatcactgacctcttttcattctcagagccgagcctccg 54083180  T
Q  219 aattcttagggacggccctg 238  Q
    |||| |||||||||||||||    
T  54083179 aatttttagggacggccctg 54083160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 13460178 - 13460306
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  13460178 agaattagttcctcttgattttggtgttaggtgggggttccttatgtatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgta 13460277  T
Q  119 tttatcttttaaaaaatataaatagaaca 147  Q
    |||||||||||||||||||||||||||||    
T  13460278 tttatcttttaaaaaatataaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 35779461 - 35779248
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||| |||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  35779461 agaattagttcctcttgcttttgatgttaggtgaaggttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgta 35779362  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||| ||||||||||||||||||            |||||||||||||||||| |||| ||||||||||  |||  || ||||||    
T  35779361 tttatcttttaaaaaatat-aatagaacattgctcttt--aaaaaaaatacgttttgattttatcactagcctcttttcattcctcgagtcgaacctccg 35779265  T
Q  219 aattcttagggacggcc 235  Q
    |||||| | ||||||||    
T  35779264 aattctcaaggacggcc 35779248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 10428335 - 10428115
Alignment:
Q  25 agttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcac--------ctctgggtgtaccgcatatatacgacaccttg 116  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||    
T  10428335 agttcctcttgattttggtgttaggtggaggttcctcatgtatacggtagtcattttcacaatttcacctctgggtgtaccgcatatatacggcaccttg 10428236  T
Q  117 tatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctc 216  Q
    ||||||||||||||||||||||||||||||||||  |||||             ||||||||||| ||||| ||| |||||||||||||||| |||||||    
T  10428235 tatttatcttttaaaaaatataaatagaacattg--ctttttaaaaaaaataaattttgattttagcactgacctcttttcattcccagagccgagcctc 10428138  T
Q  217 cgaattcttagggacggccctgt 239  Q
    ||||||||   ||||||||||||    
T  10428137 cgaattctcgaggacggccctgt 10428115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 55255240 - 55255447
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             || |||||||||    
T  55255240 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtg------------gcggcaccttgta 55255327  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||| ||||||||  |||||| |||||||||    
T  55255328 tttatcttttaaaaaatataaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgagcctccg 55255427  T
Q  219 aattcttagggacggccctg 238  Q
    |||||| |||||||||||||    
T  55255428 aattctcagggacggccctg 55255447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 40089487 - 40089715
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||| ||    
T  40089487 agaattaggtcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttata 40089586  T
Q  119 tttatcttttaaa---------aaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagct 209  Q
    |||||||||||||         ||||||||||| ||||||||| ||||           ||||||||||||||||||| | | |||||||||| |||||     
T  40089587 tttatcttttaaaaatataaataaatataaataaaacattgct-tttttaaaaaaaatacgttttgattttatcactgacttcttttcattccaagagcc 40089685  T
Q  210 gagcctccgaattcttagggacggccctgt 239  Q
    ||||||||||||||||||||||| ||||||    
T  40089686 gagcctccgaattcttagggacgaccctgt 40089715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 16882531 - 16882313
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| ||||||||| ||||||| |||  ||||||||||||||||||||| | ||||||||| ||||| ||| |||||| ||    
T  16882531 agaattaggtcctcttgcttttggtgttaggtgagggttccccatacatacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttata 16882432  T
Q  119 tttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccg 218  Q
    ||||||||||||||| |||||||||||||||| | ||||           ||||||||||||||||||| | | |||||||||| ||||| |||||||||    
T  16882431 tttatcttttaaaaagtataaatagaacattg-ttttttttaaaaaaatacgttttgattttatcactgacttcttttcattcctagagccgagcctccg 16882333  T
Q  219 aattcttagggacggccctg 238  Q
    ||||||||||||||||||||    
T  16882332 aattcttagggacggccctg 16882313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 17679432 - 17679589
Alignment:
Q  80 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattt 179  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||           |||||||||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatattgctcttttaaaaaaaata-cgttttgattt 17679530  T
Q  180 tatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||| || |||||||||||||| | ||||||||||||||| || ||||||||||    
T  17679531 tatcactggtctcttttcattcccagaaccgagcctccgaattctcagagacggccctg 17679589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 35465090 - 35465281
Alignment:
Q  31 tgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa 130  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||| |||||||| | | ||||||||||||||||||| |||||| |||||||||| |||    
T  35465090 tgttgcttttggtgttaggtggggattcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatacg-caccttttatttatcttgtaa 35465188  T
Q  131 aaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    |||||||||||| ||||||| ||||||          | |||||||||||||||||| ||| ||||||||||||||   |||||||||||||||    
T  35465189 aaaatataaatataacattgttcttttaaaaaaaatat-gttttgattttatcactgacctcttttcattcccagaatcgagcctccgaattct 35465281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 37 - 232
Target Start/End: Complemental strand, 38352373 - 38352189
Alignment:
Q  37 ttttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||          |||||| ||||||||||||||||||||    
T  38352373 ttttggtgttaggtgggggttcctcatgtacacggtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaata 38352284  T
Q  137 taaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacg 232  Q
    |||||||| |||| || ||||           |||||||||||||||||||  || |||||||||||||||| |||||||||||||||||||||||    
T  38352283 taaatagatcattact-ttttaaaaaaaaatacgttttgattttatcactgatctcttttcattcccagagccgagcctccgaattcttagggacg 38352189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 16922409 - 16922245
Alignment:
Q  75 tcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnnnnnntcgttt 173  Q
    |||||||||||| ||||  ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||            |||||    
T  16922409 tcattttcacctttggggatactgcatatatacgacactttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaataaaaaacgttt 16922310  T
Q  174 tgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||||||||||| || |||||||||||| ||  |||||||| |||||| |||||||||||||    
T  16922309 tgattttatcactggtctcttttcattcccaaagtcgagcctccaaattctcagggacggccctg 16922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 51964736 - 51964884
Alignment:
Q  76 cattttcacctctgggtgtaccgcatatatacgacaccttgtatttatctttt---aaaaaatataaatagaacattgctcttttnnnnnnnnnntcgtt 172  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||           ||||    
T  51964736 cattttcacctctgggtgtatcgcatatatacggcaccttgtatttatctttttaaaaaaaatataaatagaacattgctcttttaaaaaaaata-cgtt 51964834  T
Q  173 ttgattttatcactggcctattttcattcccagagctgagcctccgaatt 222  Q
    ||||||||||||  ||||| |||||||||||||||| ||| |||||||||    
T  51964835 ttgattttatcatcggcctcttttcattcccagagccgagtctccgaatt 51964884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 23509934 - 23509846
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatac 107  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  23509934 agaattagttcctcttgattttggtgttaggtgggggttcctcatgtctacggtagtcattttcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 24969408 - 24969536
Alignment:
Q  19 agaatcagttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgta 118  Q
    ||||| || |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||          |||||| ||    
T  24969408 agaattagatcctcttgcttttggtgttaggtgggggttcctcatgtatacggtagtcattttcacctttgggtgtaccgc----------caccttata 24969497  T
Q  119 tttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  24969498 tttatcttttaaaaaatataaatagatcattgctttttt 24969536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 36118559 - 36118463
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||| ||||||||||||||||| |||||||  | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36118559 ggttactcatgtatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 36118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 52468292 - 52468395
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||| |||||||||| |||||||||| ||| ||||   |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||    
T  52468292 ggttcctcatgcatacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttc 52468391  T
Q  154 tttt 157  Q
    ||||    
T  52468392 tttt 52468395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 4167992 - 4167910
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata 136  Q
    ||||||||||||||| |||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||    
T  4167992 ggttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaata 4167910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 36178684 - 36178774
Alignment:
Q  60 tcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||||||| |||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  36178684 tcatgtataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattg 36178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 27112036 - 27112132
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||||||||||||||| |||||||| | | |||||| |||||||||| | |||||||||||||||||||||||||| ||||| ||||||||    
T  27112036 ggttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 27112132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 51691980 - 51691913
Alignment:
Q  90 ggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  51691980 ggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgctctttt 51691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 2135422 - 2135326
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||| |||||| |||| || || |||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  2135422 ggttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattg 2135326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 9578736 - 9578575
Alignment:
Q  84 cctctgggtgtaccgcatatatacgac-accttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnnt-cgttttgat---- 177  Q
    ||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||          | |||||||||        
T  9578736 cctctggatgtaccgcatatatatggctaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaagaaatacgttttgatttta 9578637  T
Q  178 -tttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
     ||||||||| |||| |||||| ||||||||  ||||||||||||||| | |||||||||||    
T  9578636 atttatcacttgcctcttttcactcccagagtcgagcctccgaattctcaaggacggccctg 9578575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 23508564 - 23508443
Alignment:
Q  102 atatacgacaccttgtatttatcttttaaaaaa-tataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcatt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||            | ||||||||||||||||||||| ||||||||    
T  23508564 atatacgacaccttgtatttatcttttaaaaaattataaatagaacattgctcattaaaaaaaaaatacattttgattttatcactggcctcttttcatt 23508465  T
Q  201 cccagagctgagcctccgaatt 222  Q
    |||| ||| |||||||||||||    
T  23508464 cccaaagccgagcctccgaatt 23508443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 37745011 - 37744916
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa-aaaatataaatagaacat 148  Q
    ||||||||| |||||||||||| |||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||    
T  37745011 ggttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaatagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 39329492 - 39329390
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 154  Q
    ||||||| |||||||||||   ||||||| || |||||||| | ||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |||    
T  39329492 gttcctcctgtatacggtatggattttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttct 39329393  T
Q  155 ttt 157  Q
    |||    
T  39329392 ttt 39329390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 39655332 - 39655252
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    |||||||||| |||||||||||||||||| ||  || |||||||||||||||||||||| |||||||||||||| ||||||    
T  39655332 attttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctttt 39655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 10042101 - 10041998
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    |||||||| ||||||||||||| |||||||| | | |||||| | |||| ||||| |||||||||||||| |||| |||||| |||||||||||||| ||    
T  10042101 ggttcctcctgtatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaatagaacattgttc 10042002  T
Q  154 tttt 157  Q
    ||||    
T  10042001 tttt 10041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 24396940 - 24397043
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||||||||||||||| |||| |||||||||| || ||||| | |||||||||  |||||| ||||||||||||||||||| |||||| || |||| ||    
T  24396940 ggttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatattgttc 24397039  T
Q  154 tttt 157  Q
    ||||    
T  24397040 tttt 24397043  T

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Target: chr4; HSP #46
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 24969717 - 24969786
Alignment:
Q  169 cgttttgattttatcactggcctattttcattcccagagctgagcctccgaattcttagggacggccctg 238  Q
    ||||||| |||||||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  24969717 cgttttgtttttatcactagcctcttttcattcccagagtcgagcctccgaattcttagggacggccctg 24969786  T

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Target: chr4; HSP #47
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 40217238 - 40217327
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatag 143  Q
    |||| |||||||||| | || | ||||||| || ||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||    
T  40217238 ggttactcatgtatatgctaatgattttcatctttggatgtatcgcatatatacgacaccttatatttatcttttaaaaaatttaaatag 40217327  T

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Target: chr4; HSP #48
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 45656181 - 45656277
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||| ||||||||||| | || |||||||| | ||| | || |||||||||| ||||||||| |||||||||||||||||| |||||| |||||||    
T  45656181 ggttcgtcatgtatacgttcgtgattttcacatttggatttatcgcatatatatgacaccttgcatttatcttttaaaaaatttaaataaaacattg 45656277  T

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Target: chr4; HSP #49
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 36362964 - 36362869
Alignment:
Q  62 atgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||| |||||| |||| ||| | ||||||||  ||||||||||| ||| |||||||||||||||||||||| |||| ||| ||||| ||||||    
T  36362964 atgtatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaacagagcattgttctttt 36362869  T

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Target: chr4; HSP #50
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 15735102 - 15735189
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaaca 147  Q
    ||||||||||||||||||| | |||||||  | | ||||||     ||||||||||  ||||||||||||||||||||||| |||||||||||    
T  15735102 gttcctcatgtatacggtaatgattttcattttttggtgta-----tatatacgacgtcttgtatttatcttttaaaaaatttaaatagaaca 15735189  T

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Target: chr4; HSP #51
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 24614018 - 24614061
Alignment:
Q  113 cttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  24614018 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 24614061  T

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Target: chr4; HSP #52
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 30507162 - 30507120
Alignment:
Q  115 tgtatttatcttttaaaaaatataaatagaacattgctctttt 157  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttctttt 30507120  T

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Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 29425237 - 29425187
Alignment:
Q  92 tgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaata 142  Q
    ||||| ||||||||||| |||||| ||||||| ||||||||||| ||||||    
T  29425237 tgtactgcatatatacggcaccttatatttattttttaaaaaatttaaata 29425187  T

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Target: scaffold0070 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 1315 - 1527
Alignment:
Q  25 agttcctgttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatc 124  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  1315 agttcctcttgattttggtgttaggtgggggttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatc 1414  T
Q  125 ttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttcattcccagagctgagcctccgaattct 224  Q
    ||||||||||||||||||||||| |||||||||           ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  1415 ttttaaaaaatataaatagaacagtgctcttttaaaaaaaata-cgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattct 1513  T
Q  225 tagggacggccctg 238  Q
     |||||||||||||    
T  1514 cagggacggccctg 1527  T

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Target: scaffold1590 (Bit Score: 80; Significance: 5e-37; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 360 - 257
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctc 153  Q
    ||||| |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  360 ggttcatcatgtatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttc 261  T
Q  154 tttt 157  Q
    ||||    
T  260 tttt 257  T

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Target: scaffold0012 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 206591 - 206496
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  206591 ggttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaacatt 206496  T

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Target: scaffold0097 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 38926 - 39022
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    |||||||||| ||||||||||| |||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38926 ggttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 39022  T

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Target: scaffold0182 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 24093 - 23993
Alignment:
Q  56 ttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctt 155  Q
    ||||| ||| |||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  24093 ttccttatgcatacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattgttctt 23994  T
Q  156 t 156  Q
    |    
T  23993 t 23993  T

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Target: scaffold0018 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 173612 - 173516
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattg 150  Q
    ||||||||| |||||||||||| ||||| |||| |||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  173612 ggttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaatttaaatagaacattg 173516  T

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Target: scaffold0001 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 183106 - 183244
Alignment:
Q  99 catatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnnntcgttttgattttatcactggcctattttca 198  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||  |||||||           |||||| |||||||||||||||| ||||||    
T  183106 catatatacgatactttgtatttatcttttaaaaaatataaatagaacatctctcttttaaaaaaaata-cgttttaattttatcactggcctcttttca 183204  T
Q  199 ttcccagagctgagcctccgaattcttagggacggccctg 238  Q
    |||||||||| ||||||| ||||| | |||||||||||||    
T  183205 ttcccagagccgagcctctgaattttcagggacggccctg 183244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 181899 - 181969
Alignment:
Q  33 ttgattttgatgttaggtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatat 103  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  181899 ttgattttggtgttagatgggggttcctcatgtatacggtagtcattttcacctctggatgtaccgcatat 181969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 230960 - 230858
Alignment:
Q  55 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 154  Q
    |||||||||||||| |||||| |||||||||| ||||| || ||||||||||| |||||||  ||||||||||||| |||| |||||||||||||| |||    
T  230960 gttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaatttaaatagaacattgttct 230861  T
Q  155 ttt 157  Q
    |||    
T  230860 ttt 230858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 1355 - 1450
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacatt 149  Q
    ||||||||||||||||| |||| |||||||| | ||||||||  ||||||||||  |||||| ||||||||||||||||| | |||||||||||||    
T  1355 ggttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 1450  T

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Target: scaffold0022 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 40086 - 40191
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata--taaatagaacattgc 151  Q
    |||| |||||||||||| | || ||||||||||  ||||||||  |||| ||||| ||||||||||||||||||||||||| |  ||||||||||||||     
T  40086 ggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgt 40185  T
Q  152 tctttt 157  Q
    ||||||    
T  40186 tctttt 40191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 138146 - 138251
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaata--taaatagaacattgc 151  Q
    |||| |||||||||||| | || ||||||||||  ||||||||  |||| ||||| ||||||||||||||||||||||||| |  ||||||||||||||     
T  138146 ggttgctcatgtatacgattgtgattttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgt 138245  T
Q  152 tctttt 157  Q
    ||||||    
T  138246 tctttt 138251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 351413 - 351360
Alignment:
Q  77 attttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaa 130  Q
    |||||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  351413 attttcacctttgggtgtacaacatatatacgacaccttgtatttatcttttaa 351360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 16028 - 16095
Alignment:
Q  54 ggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtattt 121  Q
    |||| ||||||||||||||||| ||||||| || ||| ||||||||||| |||||||| |||||||||    
T  16028 ggtttctcatgtatacggtagtgattttcatctttggatgtaccgcatacatacgacatcttgtattt 16095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 16123 - 16168
Alignment:
Q  111 accttgtatttatcttttaaaaaatataaatagaacattgctcttt 156  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  16123 accttgtatttatcttttaaaaaatttaaatagaacatttctcttt 16168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 23879 - 23976
Alignment:
Q  49 gtgggggttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaac 146  Q
    ||||||||| ||  ||||||||||||||||||| |  | |||| || || || | ||||| |||||  ||||||| |||||||||| |||||||||||    
T  23879 gtgggggtttcttgtgtatacggtagtcatttttatttttgggggttccccaaaaatacggcacctcatatttattttttaaaaaaaataaatagaac 23976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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