View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_10 (Length: 502)
Name: NF18364_low_10
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Complemental strand, 24058458 - 24057999
Alignment:
| Q |
19 |
gatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgt |
118 |
Q |
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| T |
24058458 |
gatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcacagcatcaaaattctttgttgcttgt |
24058359 |
T |
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| Q |
119 |
ttgatctcatgcaaagtaaaatgcctcagaaatttgtaagcatttactgaatttttcttggacctgcaggattttaaataacgaaatgatagtccaagaa |
218 |
Q |
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| T |
24058358 |
tggatctcatgcaaagtaaaatgcctcagaaattcgtaagcatttactgaatttttcttggacctgcaggattttagataacgaaatgatagtccaagaa |
24058259 |
T |
|
| Q |
219 |
atgctagaaatgttaaaacagaaacaccgcatccaattacaatgactaattttaatttcttgnnnnnnngaattctttctgaagattttgttagaacact |
318 |
Q |
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| T |
24058258 |
atgcta---------aaacaaatacaccacatccaattacaatgactaattttaatttcttgtttgtttgaattctttctgaagattttgttagaacact |
24058168 |
T |
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| Q |
319 |
gtcaactctgttaatgaacttcattatctctatcccattcaaggttgcattttctatagtagacattgttgcaggaccaacacttactgtgagagtctcc |
418 |
Q |
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| T |
24058167 |
gtcaactctgttaatgaacttcattatctctatcccattcaaggttgcattttctatagtagacattgttgaaggaccaacacttactgtgagagtctcc |
24058068 |
T |
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| Q |
419 |
tctatggcattgaacaaaacgtccttgtaatatggttcagcaaagtcaccagaaacccttatctctgtg |
487 |
Q |
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| T |
24058067 |
tctgtggcattgaacaaaacgtccttgtaatatggttcagcaaagtcaccagaaacccttatctctgtg |
24057999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 14671583 - 14671689
Alignment:
| Q |
35 |
ccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtttgatctcatgcaaag |
134 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |||||| ||||||||||||| |||||| | |||| |
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| T |
14671583 |
ccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaacaatttgttgcttgttgcatctcaagtaaag |
14671682 |
T |
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| Q |
135 |
taaaatg |
141 |
Q |
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| T |
14671683 |
taaaatg |
14671689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 14676961 - 14677067
Alignment:
| Q |
35 |
ccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattctttgttgcttgtttgatctcatgcaaag |
134 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |||||| ||||||||||||| |||||| | |||| |
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| T |
14676961 |
ccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaacaatttgttgcttgttgcatctcaagtaaag |
14677060 |
T |
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| Q |
135 |
taaaatg |
141 |
Q |
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| T |
14677061 |
taaaatg |
14677067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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