View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_12 (Length: 468)
Name: NF18364_low_12
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 30348530 - 30348080
Alignment:
| Q |
1 |
taaagtaggatgcatatacacacaataaattaacagattaaaacaagattgaatatttttgttcgagaatctcataagatggaatataaataaagactta |
100 |
Q |
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|||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
30348530 |
taaagtagaatacatatacacacaataaattaacagactaaaac--gattgaatatttttgttcgagaatctcataaaatggaatataaataaaggctta |
30348433 |
T |
|
| Q |
101 |
aaatatgtacataacattacccctcaaactcatggtcgaaatagtagagattttgctaattaaaaccctaaatcgttgaattgaataagatttgataaa- |
199 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30348432 |
aaatatgtacataacattccccctcaaactcatggtcgaaatagtagagattttgttaattaaaaccctaaatcgttgaatggaataagatttgataaat |
30348333 |
T |
|
| Q |
200 |
--------caaatcatgagtctaaaaataaaatattagattaaccattacaaaagcatgagtaaaaaacatgaccgcaatctatttatttagttatttag |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30348332 |
ttgataaacaaatcatgagtctaaaaataaaatattagattaaccattacaaaagcatgagtaaaaaacatgaccgcaatctatttatttagtt------ |
30348239 |
T |
|
| Q |
292 |
ttcaagactagcatatcaatttcatctaacattcaccaaaaatacatttcatctaaaacaagaaacatcataagaataaacccttggcaaatctaataac |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30348238 |
--caagactagcatatcaatttcatctaacattcaccaaaaatacatttcatctaaaacaagaaacatcataagaataaacccttggcaaatctaataac |
30348141 |
T |
|
| Q |
392 |
aaaatcatgagatcaagcatacaatataagcttaaccgttgcaaaaacatgagtaaaaaat |
452 |
Q |
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| T |
30348140 |
aaaatcatgagatcaagcatacaatataagcttaaccgttgcaaaaacatgagtaaaaaat |
30348080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 13209951 - 13209843
Alignment:
| Q |
244 |
aagcatgagtaaaaaacatgaccgcaatctatttatttagttatttagttcaagactagcatatcaatttcatctaacattcaccaaaaatacatttcat |
343 |
Q |
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||||||||||||| | ||||||| |||||||||||||||||| ||||||||| |||| |||| ||| |||| ||||||||||||||| ||||| ||||| |
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| T |
13209951 |
aagcatgagtaaaga-catgaccataatctatttatttagttacttagttcaatactaacataacaacttcacctaacattcaccaaatatacacttcat |
13209853 |
T |
|
| Q |
344 |
ctaaaacaag |
353 |
Q |
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|||||||||| |
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| T |
13209852 |
ctaaaacaag |
13209843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 13209814 - 13209749
Alignment:
| Q |
386 |
aataacaaaatcatgagatcaagcatacaatataagcttaaccgttgcaaaaacatgagtaaaaaa |
451 |
Q |
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||||||||||||||| | || |||||||||||||||||||| | ||||||||||||| ||||| |
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| T |
13209814 |
aataacaaaatcatgggtccatacatacaatataagcttaaccataacaaaaacatgagttaaaaa |
13209749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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