View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_13 (Length: 459)
Name: NF18364_low_13
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_13 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 8351738 - 8351314
Alignment:
| Q |
18 |
aatatatgaattaaacaatcagaaaatcatattaaactttataaagattttaagaatgaatgcatgtagcagtaactaactgtgggttctgatttagtgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
8351738 |
aatatatgaattaaacaatcagaaaatcatattaaactttataaagattttaagaatgaatgcatgtagcagtaact----gtgggttctgatgtagtgg |
8351643 |
T |
|
| Q |
118 |
tttattttttcgcatctccttcaatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8351642 |
tttattttttcgcatctccttcaatatttctcatgatgaattttagataggaacattattagaaaaagattgaagaatttgttcttattcttgcaaagaa |
8351543 |
T |
|
| Q |
218 |
atgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8351542 |
atgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagccaaaagaatttctatatctgttattattattgttgc |
8351443 |
T |
|
| Q |
318 |
ttgggcgaattttagttattactatttgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaa----aagta |
413 |
Q |
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|||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||| ||||| |
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| T |
8351442 |
ttgggccaattttagatattactagttgtcattcatacttgtctcaccaaattcacaacaatttttttaattatacaaatttaatatttaaaaataagta |
8351343 |
T |
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| Q |
414 |
catcgataatggtaatgcttcatatattt |
442 |
Q |
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| T |
8351342 |
catcgataatggtagtgcttcatatattt |
8351314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 8413008 - 8412592
Alignment:
| Q |
18 |
aatatatgaattaaacaatcagaaaatcatattaaactttataaagattttaa-gaatgaatgcatgtagcagtaactaactgtgggttctgatttagtg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||||| |||| |
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| T |
8413008 |
aatatatgaattaaacaatcagaaaatcatattaaactttataaagattttagtgaatgaatgcatgcagcagtaact----gtggcttctgat--agtg |
8412915 |
T |
|
| Q |
117 |
gtttattttttcgcatctccttcaatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgttcttattcttgcaaaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412914 |
gtttattttttcgcatctccttcaatatttctcatgatgaattttagatacgaacataattagaaaaagattgaagcatttgttcttattcttgcaaaga |
8412815 |
T |
|
| Q |
217 |
aatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412814 |
aatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcctaatttgtgaagacaaaagaatttctatatctgttattattattgttg |
8412715 |
T |
|
| Q |
317 |
cttgggcgaattttagttattactatttgtcattgatacttgtctcaccaaattcacaacaattttcttagttatacgaatttaatatttaa----aagt |
412 |
Q |
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| T |
8412714 |
cttgggcgaattttagttatta-------tcattgatacttgtctcaccaaattcacaacaattttcttaattatacgaatttaatatttaaaagtaagt |
8412622 |
T |
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| Q |
413 |
acatcgataatggtaatgcttcatatattt |
442 |
Q |
| |
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||||||||||||||| |||||||||||||| |
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| T |
8412621 |
acatcgataatggtagtgcttcatatattt |
8412592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 70 - 269
Target Start/End: Complemental strand, 8356875 - 8356680
Alignment:
| Q |
70 |
agaatgaatgcatgtagcagtaactaactgtgggttctgatttagtggtttattttttcgcatctccttcaatatttctcatgatgaattttagatacga |
169 |
Q |
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||||||||||||||||||||||||| || | ||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||| || |
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| T |
8356875 |
agaatgaatgcatgtagcagtaact----gtagtttctgatgtcgtggtttattttttcgcatctcctttagtatttctcatgatgaattttagatcgga |
8356780 |
T |
|
| Q |
170 |
acattattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct |
269 |
Q |
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|||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| | | |||||||| |
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| T |
8356779 |
acatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatgttgcagcct |
8356680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 8427454 - 8427586
Alignment:
| Q |
30 |
aaacaatcagaaaatcatattaaactttataaagattttaa-gaatgaatgcatgtagcagtaactaactgtgggttctgatttagtggtttattttttc |
128 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||| || ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
8427454 |
aaacaatcagcaaatcattttaaacagtataaagcatttaatgaatgaatgcatgcagtagtaact----gtggtttctgatgtagtggtttattttttc |
8427549 |
T |
|
| Q |
129 |
gcatctccttcaatatttctcatgatgaattttagat |
165 |
Q |
| |
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||||||||||| |||||||||||||| ||| ||||| |
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| T |
8427550 |
tcatctccttcagtatttctcatgatggattatagat |
8427586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 8365236 - 8365084
Alignment:
| Q |
41 |
aaatcatattaaactttataaagatttta-agaatgaatgcatgtagcagtaactaactgtgggttctgatttagtggtttattttttcgcatctccttc |
139 |
Q |
| |
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|||||||||||||| ||||||| |||| |||||||||||||||||||||| ||| ||||||| | || |||||||||||| |||||||||| |
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| T |
8365236 |
aaatcatattaaacaatataaagcatttagagaatgaatgcatgtagcagta--------tggtttctgatgttgttgtttattttttctcatctccttc |
8365145 |
T |
|
| Q |
140 |
aatatttctcatgatgaattttagatacgaacattattagaaaaagattgaagcatttgtt |
200 |
Q |
| |
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|||||||||||| | ||||||||| || ||| ||||||| |||||||||||||||||| |
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| T |
8365144 |
ggtatttctcatgacggattttagattggatcatgattagaagaagattgaagcatttgtt |
8365084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 8420379 - 8420327
Alignment:
| Q |
113 |
agtggtttattttttcgcatctccttcaatatttctcatgatgaattttagat |
165 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| || |||||||| ||||||||| |
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|
| T |
8420379 |
agtggtatattttttctcatctccttcaataattttcatgatggattttagat |
8420327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 8452004 - 8451954
Alignment:
| Q |
363 |
accaaattcacaacaattttcttagttatacgaatttaatatttaaaagta |
413 |
Q |
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||||| ||| |||||||||||| | |||| ||||||||||||||||||||| |
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| T |
8452004 |
accaatttcgcaacaattttctcaattatgcgaatttaatatttaaaagta |
8451954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 9022 - 8968
Alignment:
| Q |
215 |
gaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcct |
269 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9022 |
gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagcct |
8968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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