View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_14 (Length: 451)
Name: NF18364_low_14
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 443
Target Start/End: Original strand, 44343388 - 44343807
Alignment:
| Q |
24 |
atatacatactggtgggtggagcatgtttgagttcaaaactcaacatccctgcttcaaatatcaaatttgataatgtattattatta---cctgataatc |
120 |
Q |
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| T |
44343388 |
atatatatactggtgggtggaggatgtttgagttcaaaactcaacatccctgcttcaaatatcaaatttgataatgtattattattattacctgataatc |
44343487 |
T |
|
| Q |
121 |
tttccggttcaaggaaatgatagtagactgggcaagagcatacaagaatcatttattggtctcnnnnnnnnnnnnnnnngaaattaaaggaccgttggtg |
220 |
Q |
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| T |
44343488 |
tttccggttcaaggaaatgatagtaggctgggcaagagcatacaagaatcattcattggtctctttattttctttttt-gaaattaaaggaccgttggtg |
44343586 |
T |
|
| Q |
221 |
tctgtctttattattttattagtttgggttccatgcatggttatactttcaaacatgttcctaatcctcgatcttaggcctactctgattcttgtag--- |
317 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
44343587 |
tctgtctttattattt-attagtttgggttgcatgcatggttatactttcaaacatgttcctaatcctc----ttaggcctactcggattcttgtagtag |
44343681 |
T |
|
| Q |
318 |
attggggacagacatccgaatatatattaggaatctgcctgctgtcggtgtataagttggtctcatcaacgatctaactatccttaacactccctctctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343682 |
attggggacagacatccgaatatatattaggaatctgcgtgctgtctgtgtataagttggtctcatcaacgatctaactatccttaacactccctctctc |
44343781 |
T |
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| Q |
418 |
acactatcttcatcactgtttcttct |
443 |
Q |
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| T |
44343782 |
acactatcttcatcactgtttcttct |
44343807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 25865345 - 25865390
Alignment:
| Q |
403 |
aacactcc-ctctctcacactatcttcatcactgtttcttctctct |
447 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
25865345 |
aacactcctctctctcacacaatcttcatcactgtttcttctctct |
25865390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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