View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_15 (Length: 428)
Name: NF18364_low_15
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 320
Target Start/End: Original strand, 10654466 - 10654758
Alignment:
| Q |
28 |
atccatctaagtctaaatctataacactttgatgcatgggactacatgtaactccataccagttgcagtagtgatttgaagtattccaagaggccaagat |
127 |
Q |
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||||||||||||||| ||| |||| ||||||||||||||| ||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10654466 |
atccatctaagtctagctctgtaactctttgatgcatgggattacatgtaattccatgccaattacagtagtgatttgaagtattccaagaggccaagat |
10654565 |
T |
|
| Q |
128 |
tccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatgtgttttggacaaagttg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
10654566 |
tccatatgggtcattagaaattgattctttgaatttgagtaacgctaagtaatctgtcttgtttcctaaggtagaggtaattgtgttttggacaaagttg |
10654665 |
T |
|
| Q |
228 |
agagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggattatttcggactgtgtaatt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
10654666 |
agagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggaatattttggattgtgtaatt |
10654758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 24 - 306
Target Start/End: Original strand, 10662345 - 10662627
Alignment:
| Q |
24 |
ttatatccatctaagtctaaatctataacactttgatgcatgggactacatgtaactccataccagttgcagtagtgatttgaagtattccaagaggcca |
123 |
Q |
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|||||||||||||||||||| |||||||| ||||| |||||| ||||||| | || || | |||||||||||||||| ||||||||||||||||| || |
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| T |
10662345 |
ttatatccatctaagtctaactctataactctttgttgcatgagactacacgcaatcccgtgccagttgcagtagtgagttgaagtattccaagagctca |
10662444 |
T |
|
| Q |
124 |
agattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatgtgttttggacaaa |
223 |
Q |
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| T |
10662445 |
agatctcatacgggtcattagatattgattctttgaatttgagcaacgctaagtaatccgtctcgtttcttaaggtagaggtaattgtgttttggacaaa |
10662544 |
T |
|
| Q |
224 |
gttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgaggaacaagggattattt |
306 |
Q |
| |
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| T |
10662545 |
gttgagagcaaagagaagatataaccaaaatgaaaatgttggaaacatgacaaacaaaggttttgaggaacaagggactattt |
10662627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 7190959 - 7190685
Alignment:
| Q |
16 |
catgcagcttatatccatctaagtctaaatctataacactttgatgcatgggactacatgtaactccataccagttgcagtagtgatttgaagtattcca |
115 |
Q |
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||||||||| |||||| || |||| ||| || ||| ||||||||||||||||| ||||| | ||||||||| |||||| ||||| ||||| ||||||| |
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| T |
7190959 |
catgcagctgatatccttccaagtttaactcggcaactctttgatgcatgggactgcatgtgattccataccacttgcagaagtgagttgaactattcca |
7190860 |
T |
|
| Q |
116 |
agaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcctaaggtagaattaaatgtgttt |
215 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| || ||| |||||| ||||||| |||||| ||||||||||| |
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| T |
7190859 |
agaggccaagattccatatggatcattagatattgattctttgaacttgagcaacgccaagttatcggtctcagttcctaatgtagaagtaaatgtgttt |
7190760 |
T |
|
| Q |
216 |
tggacaaagttgagagtaaagagaagagataaccaaaatgaaaatgttggaaacatgattggaaaaggttttgag |
290 |
Q |
| |
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|||| ||||||| || || ||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
7190759 |
tggaagaagttgaaagcaatgagaaaagataaccaaagtgaaaatgttggaaacatgacatgaaaaggctttgag |
7190685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 10655007 - 10655068
Alignment:
| Q |
353 |
gagtactagtttactaaccatgtttctggcatgcttgtataaatcattatcataagtagttg |
414 |
Q |
| |
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||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| |||| |
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| T |
10655007 |
gagtactagtttattaaccatgtttctggtattgttgtataagtcattatcataagtggttg |
10655068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 9838613 - 9838736
Alignment:
| Q |
49 |
taacactttgatgcatgggactacatgtaactccataccagttgcagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaaat |
148 |
Q |
| |
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|||| |||||||||||||| | ||||| | ||||| |||||||||| |||| | |||| ||||||||| | |||| ||||| ||||||| | || || |
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| T |
9838613 |
taactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatat |
9838712 |
T |
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| Q |
149 |
tgattctttgaatttgagtaatgc |
172 |
Q |
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|||||||||||||| ||| ||||| |
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| T |
9838713 |
tgattctttgaattggagcaatgc |
9838736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 19608146 - 19608272
Alignment:
| Q |
45 |
tctataacactttgatgcatgggactacatgtaactccataccagttgcagtagtgatttgaagtattccaagaggccaagattccatatgggtcattag |
144 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| | ||||| ||| ||||| |||| ||||| |||||||||| | |||| ||||| ||||||| | | |
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| T |
19608146 |
tctataactctttgatgcatggggctgcatgtgattccatgccaattgcaaaagtgtgttgaactattccaagaatctaagactccatttgggtcaattg |
19608245 |
T |
|
| Q |
145 |
aaattgattctttgaatttgagtaatg |
171 |
Q |
| |
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| T |
19608246 |
atattgaatctttgaattggagcaatg |
19608272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 12955641 - 12955599
Alignment:
| Q |
132 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
174 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
12955641 |
tatgggtcactagaaattgattctttgaatttgagcaatgcca |
12955599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 12897406 - 12897364
Alignment:
| Q |
132 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
174 |
Q |
| |
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||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12897406 |
tatgggtcactggaaattgattctttgaatttgagcaatgcca |
12897364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 12946482 - 12946440
Alignment:
| Q |
132 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
174 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12946482 |
tatgggtcactggaaattgattctttgaatttgagcaatgcca |
12946440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 12955919 - 12955877
Alignment:
| Q |
132 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
174 |
Q |
| |
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||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
12955919 |
tatgggtcacttgaaattgattctttgaatttgagcaatgcca |
12955877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 17925774 - 17925816
Alignment:
| Q |
132 |
tatgggtcattagaaattgattctttgaatttgagtaatgcca |
174 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
17925774 |
tatgggtcactagaaattgattctttgaatttgagcaatgcca |
17925816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 31469498 - 31469583
Alignment:
| Q |
109 |
tattccaagaggccaagattccatatgggtcattagaaattgattctttgaatttgagtaatgccaggtaatctgtctcatttcct |
194 |
Q |
| |
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||||||||||| | ||||||| || || ||| || || |||||||| ||||||||||| ||||||| ||||||| ||||||||| |
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| T |
31469498 |
tattccaagagtctaagattctatttgagtctttggatattgattccttgaatttgagcaatgccaaaaaatctgtatcatttcct |
31469583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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