View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_16 (Length: 420)
Name: NF18364_low_16
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 217 - 405
Target Start/End: Complemental strand, 6340157 - 6339969
Alignment:
| Q |
217 |
gtattcaggggtgaaaagtatctttaacagaggccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacgaaatcactgca |
316 |
Q |
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| T |
6340157 |
gtattcaggggtgaaaagtatctttaacagaggccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacgaaatcactgca |
6340058 |
T |
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| Q |
317 |
gctcaaagtgccactggtttaatcaaaggtggattcaatgttgttggtgatatcactagctctataattgatacctacacttcctcctt |
405 |
Q |
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| T |
6340057 |
gctcaaagtgccactggtttaatcaaaggtggattcaatgttgttggtgatatcactagctctataattgatacctacacttcctcctt |
6339969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 6340370 - 6340221
Alignment:
| Q |
14 |
acaagcagatcaattattttggttgaggataaaatatggaaagaacattgact----------gtatcagtctctnnnnnnntaatatagttttgaatca |
103 |
Q |
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| T |
6340370 |
acaagtagatcaattattttggatgaggataaaatatggaaagaacattgactcatatgatttgaatcagtctctaaaaaaataatatagttttgaatca |
6340271 |
T |
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| Q |
104 |
gaacattaatttggccctataaataatgagatggttgcaacaggcaaacc |
153 |
Q |
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| T |
6340270 |
gaacattaatttggccctataaataatgagatggttgcaacatgcaaacc |
6340221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 6277346 - 6277284
Alignment:
| Q |
243 |
acagaggccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacg |
305 |
Q |
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| T |
6277346 |
acagaagccaaaaggtgaaggggacagtgatattgatgcataggaatgtgttggatatcaacg |
6277284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 393
Target Start/End: Complemental strand, 6291584 - 6291434
Alignment:
| Q |
243 |
acagaggccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacgaaatcactgcagctcaaagtgccactggtttaatcaa |
342 |
Q |
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| T |
6291584 |
acagaagccaaatggtgaaggggacagtgatattgatgcaaaagaatgtgtttgatatagactccctcacttcagctacaagtcccgctggtttaatcaa |
6291485 |
T |
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| Q |
343 |
aggtggattcaatgttgttggtgatatcactagctctataattgataccta |
393 |
Q |
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| T |
6291484 |
aggtgttatcaatcttgttcatggtatcattagctatataattgacaccta |
6291434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 6572742 - 6572804
Alignment:
| Q |
243 |
acagaggccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacg |
305 |
Q |
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| T |
6572742 |
acagaagccaaaaggtgaaggggacagtgatattgatgcatacgaatgtttaggatatcaacg |
6572804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 6365469 - 6365395
Alignment:
| Q |
250 |
ccaaaaggtgaaggggacagtgatattgatgcataagaatgtattggatatcaacgaaatcactgcagctcaaag |
324 |
Q |
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| T |
6365469 |
ccaaaaggtgaagggaactgtggtgttgatgcaaaagaatgtcttagacatcaacgaactcactgcagctcaaag |
6365395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 6324562 - 6324509
Alignment:
| Q |
217 |
gtattcaggggtgaaaagtatctttaacagaggccaaaaggtgaaggggacagt |
270 |
Q |
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| T |
6324562 |
gtattcagggttcaaaagtatgcttaagagaggccaaaaggtgaagggcacagt |
6324509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Complemental strand, 6324659 - 6324630
Alignment:
| Q |
113 |
tttggccctataaataatgagatggttgca |
142 |
Q |
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| T |
6324659 |
tttggccctataaataatgagatggttgca |
6324630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Complemental strand, 6277258 - 6277202
Alignment:
| Q |
343 |
aggtggattcaatgttgttggtgatatcactagctctataattgatacctacacttc |
399 |
Q |
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| T |
6277258 |
aggtggattcaaggttcttggtaatctcacttgctctataattgacacctacgcttc |
6277202 |
T |
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