View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18364_low_17 (Length: 400)
Name: NF18364_low_17
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 28243540 - 28243653
Alignment:
| Q |
279 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggttgtagagctcagtttgttgtatcagaaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28243540 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggctgtagagctcagtttgttgtatcagaaa |
28243639 |
T |
|
| Q |
379 |
attaagcctttgct |
392 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28243640 |
attaagcctttgct |
28243653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 28243186 - 28243294
Alignment:
| Q |
174 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatttttgaaccatgtagttgcatgg-cactaaacaaggttactttataggttgcaaaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28243186 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatcattgaaccatgtagttgcatggccactaaacaaggttactttataggttgcaaaa |
28243285 |
T |
|
| Q |
273 |
caattgcat |
281 |
Q |
| |
|
|||||||| |
|
|
| T |
28243286 |
taattgcat |
28243294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 33842690 - 33842736
Alignment:
| Q |
109 |
cttgaaactaatagaatcaaccagagtttgaaagcataagaaattca |
155 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
33842690 |
cttgaaactgatagaatcaaccacagttggaaagcatacgaaattca |
33842736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University