View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_18 (Length: 396)
Name: NF18364_low_18
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 4983421 - 4983803
Alignment:
| Q |
1 |
aatacatatagtagcttcaaaaaagtatttataggannnnnnnn--cttggaaagaagaaagtgctctatttgggcgcttacgttcttggcaatatccga |
98 |
Q |
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| T |
4983421 |
aatacatatagtagcttcaaaaaagtatttataggattttttttttcttggaaagaagaaagtgctctatttgggcgcttacgttcttggcaatatccga |
4983520 |
T |
|
| Q |
99 |
aggaaaatgtttcctacgaaattgtcactgaaatcctcaggaaaattgataggcaattagggaagttctaatagtgttaacatactaattagtgaaacac |
198 |
Q |
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| T |
4983521 |
aggaaaatgtttcctacgaaattgtcactgaaatcctcaggaaaattgataggcaattagggaagttctaatagtgttaacatactaattagtgaaacac |
4983620 |
T |
|
| Q |
199 |
tatgaacctacttgtattacgtaattgtt-aagagtcaaatacaatgttcaatgaatctaatagttcccttttacttggcaatccaaacgtttccaattt |
297 |
Q |
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| T |
4983621 |
tatgaacctacttgtattacgtaattgttaaagagtcaaatacaatgttcaatgaatctaatagttccctttcacttggcaatccaaacgtttccaattt |
4983720 |
T |
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| Q |
298 |
attatctgattctagttggtgcattataatttatgtccttctagttggtgatagacatatttaagaaatttcatcaaagaaaa |
380 |
Q |
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| T |
4983721 |
attatctgattctagttggtgcattataatttatgtccttctagttggtgatagacatatttaagaaatttcatcaaagaaaa |
4983803 |
T |
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