View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_19 (Length: 384)
Name: NF18364_low_19
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 232 - 374
Target Start/End: Original strand, 4384677 - 4384819
Alignment:
| Q |
232 |
ttgtccctgctcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggttttcccgatcc |
331 |
Q |
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| T |
4384677 |
ttgtcactgctcattaactcatgcaccaacattctatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggttttaccgatcc |
4384776 |
T |
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| Q |
332 |
attctcttaacagcaatgacattacaagatgttgctacctttg |
374 |
Q |
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| T |
4384777 |
attctcttaacagcaatgacattacaagatgttgctacctttg |
4384819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 4111291 - 4111190
Alignment:
| Q |
54 |
atcaaatatgatagttcagttctgaataattcagagactttatcagtggatgtgaaacttgtaagatattgccaatgaaaatctcatggtttttctttaa |
153 |
Q |
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| T |
4111291 |
atcaaatatgatagttcagttctgaa-aattctgagactttagcagtggatgtgaaacttgtaagatattgcaaatgaaaatctcatggtttttctttaa |
4111193 |
T |
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| Q |
154 |
ata |
156 |
Q |
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||| |
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| T |
4111192 |
ata |
4111190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4384581 - 4384661
Alignment:
| Q |
1 |
tagaaagagatgatgatatatttcaggtttttctttagcacaagggaaagtggatcaaatatgatagttcagttctgaata |
81 |
Q |
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| T |
4384581 |
tagaaagagatgatgatatatttcaggtttttctttagcacaagggaaagtggatcaaatatgatagttcagttctgaata |
4384661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 4110454 - 4110397
Alignment:
| Q |
310 |
ttgtggccggttttcccgatccattctcttaacagcaatgacattacaagatgttgct |
367 |
Q |
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| T |
4110454 |
ttgtggccggttttaccgatccattctcttaacagcaatgacattacaagatgttgct |
4110397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 4107305 - 4107224
Alignment:
| Q |
242 |
tcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggtttt |
323 |
Q |
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| T |
4107305 |
tcatgaactcatataccaacattctatgcattccctcatcacagtatccaatcaacttgaccaagtttttgtggcaggtttt |
4107224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 4130489 - 4130405
Alignment:
| Q |
239 |
tgctcattaactcataaaccaacattcaatccattccttcatcacactatcctatcaactttaccaagtttttgtggccggtttt |
323 |
Q |
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||||||| |||||||| || ||||||| || || |||||||||||| |||| | |||| |||||||||||||||||| |||||| |
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| T |
4130489 |
tgctcatgaactcatatactaacattctatgcaatccttcatcacaaaatccaaccaaccttaccaagtttttgtggcaggtttt |
4130405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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