View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_2 (Length: 625)
Name: NF18364_low_2
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Original strand, 47659604 - 47660200
Alignment:
| Q |
18 |
attacttatatagtttgtcctatacaatcatcatttctctcatctatgacgtgtgattatgcnnnnnnnnnnng-tgaannnnnnnattacaaaaaatgt |
116 |
Q |
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| T |
47659604 |
attacttatatagtttgtcctatacaatcatcatttctctcatctatgacgtgtgattatgcaaaaaaaaaaaggtgaatttttttattacaaaaaatgt |
47659703 |
T |
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| Q |
117 |
gtatttgttgactaataataaatgagattatataatttaatagattagcttttgttgaaatataaagatgtaatcaaaatgcaatatacctaaaaagaaa |
216 |
Q |
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| T |
47659704 |
gtatttgttgactaataa---atgagattatataatttaatagattagcttttgttgaaatataaagatgtaatcaaaatgcaatatacctaaaaagaaa |
47659800 |
T |
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| Q |
217 |
atggtcaaaaatgaatttcttttagggattgattgaattaatgaattgaaaaacacgtttctgaatgtaaatgaccaaaaatacaattaaccttatannn |
316 |
Q |
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| T |
47659801 |
atggtcaaaaatgaatttcttttagggattgattgaattaatgaattgaaaaacacgtttctgaatgtaaatgaccaaaaatacaattaacctttttttt |
47659900 |
T |
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| Q |
317 |
nnnnnn--cctatgctttatatatagtgatgttgttcaaatagttcacacaacaatggttcctagctttccgccaattatgacggcaccaaaaacgccac |
414 |
Q |
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| T |
47659901 |
ttttttttcctatgctttatatatagtgatgttgttcaaatagttcaaacaacaatggttcctagctttccgccaattatgatggcaccaaaaacgccac |
47660000 |
T |
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| Q |
415 |
actagacataaaaaatggtaagagacagagcttcctattgaatttccagactgtcgtttaccccaaacaaaaacataaccccatttttggacattaaatc |
514 |
Q |
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| T |
47660001 |
actagacataaaaaatggtaagagacagagcttcctattgaatttccagactgtcgtttaccccaaacaaaaacataaccccatttttggacattaaatc |
47660100 |
T |
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| Q |
515 |
taatcaaaatggacactttgnnnnnnncttcttccttgtttgggttttggtgttgttgttgttgcaccttctccaaaacaaattctgttacacttttctt |
614 |
Q |
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| T |
47660101 |
taatcaaaatggacactttgtttttttcttcttccttgtttgggttttggtgttgttgttgttgcaccttctccaaaaccaattctgttacacttttctt |
47660200 |
T |
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