View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_20 (Length: 378)
Name: NF18364_low_20
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 32096904 - 32096575
Alignment:
| Q |
31 |
tcccaatgcctcctcaaatacatcctcttcacagtcccatacctccacaccaaaaaccatgacgaaacctcccctcaaactcatgatgcaggcgttgacc |
130 |
Q |
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| T |
32096904 |
tcccaatgcctcctcaaatacatcctcttcacagtcccatacctccacaccaaaaaccatgacgaaacctcccctcaaactcatgatgcaggcgttgacc |
32096805 |
T |
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| Q |
131 |
cctcctccaagttacgcggcaagggaacaccgcaagacgagctgagcgccaaccatgtcctcgcggagcgacgaagaagagagaaactcaatgagaggtt |
230 |
Q |
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| T |
32096804 |
cctcctccaagttacgtggcaagggaacaccgcaagacgagctgagcgccaaccatgtcctcgcggagcgacgaagaagagagaaactcaatgaaaggtt |
32096705 |
T |
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| Q |
231 |
cattattttaagatcattggttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagctaagaagaaagata |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096704 |
cattattttaagatcattggttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagctaagaagaaagata |
32096605 |
T |
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| Q |
331 |
caagatcttgaaacacgtaaccgtcagata |
360 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32096604 |
caagatcttgaaacacgtaaccgtcagata |
32096575 |
T |
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