View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_23 (Length: 370)

Name: NF18364_low_23
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_23
NF18364_low_23
[»] chr3 (2 HSPs)
chr3 (4-356)||(8102129-8102481)
chr3 (133-356)||(40147458-40147681)
[»] chr4 (5 HSPs)
chr4 (183-356)||(7656230-7656403)
chr4 (202-356)||(7606108-7606262)
chr4 (198-356)||(7636932-7637090)
chr4 (198-356)||(7615118-7615276)
chr4 (198-278)||(7628556-7628636)
[»] chr7 (3 HSPs)
chr7 (198-356)||(8936185-8936343)
chr7 (202-356)||(8941830-8941983)
chr7 (198-333)||(8913705-8913840)
[»] chr6 (2 HSPs)
chr6 (206-356)||(6500375-6500525)
chr6 (195-264)||(11968792-11968861)
[»] chr8 (2 HSPs)
chr8 (193-274)||(15196335-15196416)
chr8 (316-356)||(15745034-15745074)
[»] scaffold0190 (1 HSPs)
scaffold0190 (193-264)||(4319-4390)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 8102129 - 8102481
Alignment:
Q  4 agatggacatcatcaacaaaatcaatagcgttttcccccaaaaaagtttaatttaacaaaagaaagactagaacatcgttaatttactacggattacaac 103  Q
    ||||| |||| | ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  8102129 agatgtacataagcaacataatcaatagcgttttccccgaaaaaagttttatttaacaaaagaaagactagaacatcgttaatttattatggattacaac 8102228  T
Q  104 acacaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcattt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8102229 acacaaattcaagaatatgaactaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcattt 8102328  T
Q  204 cccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102329 cccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttc 8102428  T
Q  304 cactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102429 cactgcgaactgccactggttttccccatccaaaattattgccataaacatca 8102481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 356
Target Start/End: Complemental strand, 40147681 - 40147458
Alignment:
Q  133 gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag 232  Q
    |||||||||  ||||||||||  |||||| |||  ||||| || ||||  ||||||||  || | |||||||||||||||||||||||||||||||||||    
T  40147681 gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag 40147582  T
Q  233 acatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggttttccccat 332  Q
    ||| ||||||| |||||| |||||||||||| ||||||||||||||| || || |||||||  |||||||||||||||||||||||| |||| |||||||    
T  40147581 acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccat 40147482  T
Q  333 ccaaaattattgccataaacatca 356  Q
    ||||||| ||| ||||||||||||    
T  40147481 ccaaaatcattaccataaacatca 40147458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 356
Target Start/End: Complemental strand, 7656403 - 7656230
Alignment:
Q  183 tccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaa 282  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| |||||||||||||||||||  ||  ||    
T  7656403 tccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaaa 7656304  T
Q  283 acagtccactttgtttatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
     || |||| ||  |||||||||||| ||||||||||| || |||||||||||||||| ||| ||||||||||||    
T  7656303 ccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatca 7656230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 356
Target Start/End: Original strand, 7606108 - 7606262
Alignment:
Q  202 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt 301  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  7606108 ttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 7606207  T
Q  302 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    |||||| |||||||| |  |||||||||||||| |||| ||| ||||||||||||    
T  7606208 tccactacgaactgctataggttttccccatccgaaatcattaccataaacatca 7606262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 356
Target Start/End: Original strand, 7636932 - 7637090
Alignment:
Q  198 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 297  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||  |||||| ||  ||    
T  7636932 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattt 7637031  T
Q  298 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    ||| |||||| ||||||||||  || |||||||||||||||| ||| ||||||||||||    
T  7637032 tatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatca 7637090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 198 - 356
Target Start/End: Original strand, 7615118 - 7615276
Alignment:
Q  198 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 297  Q
    |||||||||||||||||||||||||  || | |||||| |||||||| || |||||||||||||||||||||||||| || | ||  |||||| ||  ||    
T  7615118 tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt 7615217  T
Q  298 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    ||| |||||| ||||||||||| || |||||||| ||||||| ||| ||||||||||||    
T  7615218 tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatca 7615276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 7628556 - 7628636
Alignment:
Q  198 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaataca 278  Q
    ||||||||||||||||||||||||| || ||||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  7628556 tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaataca 7628636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 198 - 356
Target Start/End: Complemental strand, 8936343 - 8936185
Alignment:
Q  198 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 297  Q
    |||||||||||||||||||||||||  |  |||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||  |||||| ||  ||    
T  8936343 tcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactgtaataagtccatttgctt 8936244  T
Q  298 tatttccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    ||| |||||  ||| |||| || || |||||||||||||||| ||| ||||||||||||    
T  8936243 tatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatca 8936185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 202 - 356
Target Start/End: Complemental strand, 8941983 - 8941830
Alignment:
Q  202 ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatt 301  Q
    |||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||   |  | |||| ||  |||||     
T  8941983 ttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata 8941884  T
Q  302 tccactgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    |||||| || ||||| |  |||||||||||||| |||| ||| ||||||||||||    
T  8941883 tccactacg-actgctataggttttccccatccgaaatcattaccataaacatca 8941830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 8913840 - 8913705
Alignment:
Q  198 tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtt 297  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| ||| ||||||||||||||||  ||||||| | ||  |||||| ||  ||    
T  8913840 tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattt 8913741  T
Q  298 tatttccactgcgaactgccactggttttccccatc 333  Q
    ||| |||||| ||||||||||| || ||||||||||    
T  8913740 tatatccactacgaactgccacaggctttccccatc 8913705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 6500375 - 6500525
Alignment:
Q  206 cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttcca 305  Q
    |||||| |||||| |||||| ||||||||| ||||||||||| |||||||||| |||| ||||||||||||||  || ||  |||  |  ||||||| ||    
T  6500375 cattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccataccatctattttatttaca 6500474  T
Q  306 ctgcgaactgccactggttttccccatccaaaattattgccataaacatca 356  Q
    ||||||| |||||| ||||| ||||||||||||| ||| ||||||| ||||    
T  6500475 ctgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatca 6500525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 11968792 - 11968861
Alignment:
Q  195 ggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 264  Q
    |||||||||  ||| |||||||||||||||| ||||||||| |||| || ||| ||||||||||||||||    
T  11968792 ggatcatttttcatggcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta 11968861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 15196416 - 15196335
Alignment:
Q  193 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaa 274  Q
    |||| |||||||||||  |||||||||||||||  |||||||| |||| || ||||||||| ||||||||| | ||||||||    
T  15196416 cagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa 15196335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 15745074 - 15745034
Alignment:
Q  316 ccactggttttccccatccaaaattattgccataaacatca 356  Q
    |||| ||||||||||| ||||||| ||||||||||||||||    
T  15745074 ccacaggttttccccaaccaaaatcattgccataaacatca 15745034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 4319 - 4390
Alignment:
Q  193 caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta 264  Q
    ||||||||||||  |||||||||||||| |    |||||||||||||| ||||||||| ||||| |||||||    
T  4319 caggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta 4390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University