View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_28 (Length: 313)
Name: NF18364_low_28
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 29287105 - 29287290
Alignment:
| Q |
107 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaagtattgtttcatatatgaactttgataa |
206 |
Q |
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| T |
29287105 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaaatattgtttcatatatgaactttgataa |
29287204 |
T |
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| Q |
207 |
cacattgcacatgccataaacacgatt-gggtgacccatttgatgatattgatctttgaccagtaggatttggatcatttgctccc |
291 |
Q |
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| T |
29287205 |
cacattgcacatgccataaacacgattggggtgacccatttgatgatactgatctttgattagtaggatttggattatttgctccc |
29287290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 29284754 - 29284859
Alignment:
| Q |
1 |
gcacctggaaataatggacaagtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggtgtaaaaataaggtttaaatcgcacaat |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29284754 |
gcacctggaaataatggacatgtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggggtaaaaataaggtttaaatcgcacaat |
29284853 |
T |
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| Q |
101 |
tgcaac |
106 |
Q |
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|||||| |
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| T |
29284854 |
tgcaac |
29284859 |
T |
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