View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_3 (Length: 619)

Name: NF18364_low_3
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_3
NF18364_low_3
[»] chr2 (5 HSPs)
chr2 (19-609)||(16907680-16908272)
chr2 (306-376)||(41501073-41501143)
chr2 (250-373)||(17560787-17560909)
chr2 (245-357)||(40800163-40800273)
chr2 (314-357)||(13779107-13779150)
[»] chr3 (4 HSPs)
chr3 (261-376)||(5528333-5528446)
chr3 (306-376)||(27158293-27158363)
chr3 (315-373)||(25410420-25410477)
chr3 (306-362)||(35314124-35314180)
[»] chr4 (2 HSPs)
chr4 (248-357)||(53402530-53402637)
chr4 (306-372)||(43543295-43543361)
[»] chr1 (1 HSPs)
chr1 (306-376)||(39003175-39003245)
[»] chr6 (4 HSPs)
chr6 (306-376)||(11714193-11714263)
chr6 (128-229)||(30655967-30656068)
chr6 (306-373)||(7810151-7810216)
chr6 (311-357)||(33189502-33189548)
[»] chr5 (1 HSPs)
chr5 (324-373)||(34443309-34443358)
[»] chr7 (4 HSPs)
chr7 (306-370)||(34889947-34890011)
chr7 (311-362)||(26562952-26563003)
chr7 (306-363)||(12163687-12163744)
chr7 (114-235)||(34890126-34890247)


Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Complemental strand, 16908272 - 16907680
Alignment:
Q  19 gagatgacatgtgtttgttatagcttcactaagatcatgagtttgggtatgcacaaatgttaaaattctcggcaacggtttgtaatccatctaggttttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16908272 gagatgacatgtgtttgttatagcttcactaagatcatgagtttgggtatccacaaatgttaaaattctcggcaacagtttgtaatccatctaggttttg 16908173  T
Q  119 ttctagatcggctagaaagtcagtcccataaagacacgtggacacggaaccctctgagcaagacattattatctgggcgaacacgctagttcccatgcat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  16908172 ttctagatcggctagaaagtcagtcccataaagacacgtggacacgaaaccctccgagcaagacattatggtctgggcgaacacgctagttcccatgcat 16908073  T
Q  219 gtgaccgcactcaagcacccc--gcctgccacatttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggta 316  Q
    |||||||||||||||||||||  ||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  16908072 gtgaccgcactcaagcaccccccgcctgccacatttcacggaatctgttagcgcctccttcttctataataaaggtgattatgcgtcacccataaacgta 16907973  T
Q  317 cgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgtcgcatgcacccttggttccaccgtgaagaacgcactgcca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16907972 cgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgtcgcatgcacccttggttccaccgtgaagaacgcactgcca 16907873  T
Q  417 ccgtaccagaacaccgcactgccaccgttgctttcattcgtcgttaccggacatatctagtttcataaatagacgaaagattaatctctacaattagaga 516  Q
    || ||||||||||||||||| |||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16907872 ccataccagaacaccgcactaccaccgttgcattgatctgtcgttaccggacatatctagtttcataaatagacgaaagattaatctccacaattagaga 16907773  T
Q  517 ccgaagatacccctttacactnnnnnnntatcttagcacacggtgggtaaatttacacaaaaacaactaagaaaagtcaaaccatctattcat 609  Q
    |||||| ||||||||||||||       |||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  16907772 ccgaaggtacccctttacactaaaaaaatatcctagcacatggtgagtaaatttacgcaaaaacaactaagaaaagtcaaaccatctattcat 16907680  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 41501073 - 41501143
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 376  Q
    |||| ||||||||||||||||||| |||  ||||||||||| |||||||||| ||||| ||||||||||||    
T  41501073 ccctcaaggtacgattcatttcccacacttttttacacattaaacctcatttcctacactgacttgagtgt 41501143  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 17560909 - 17560787
Alignment:
Q  250 tttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttc-ccgcacacttttacacattca 348  Q
    ||||| |||||  |||||||| ||||||| ||||| ||| ||||||| |||||||||| | ||||||| ||||||||  || |||| | |||||||||||    
T  17560909 tttcatggaatttgttagcgcctccttctcctata-taagggtgattctgcgtcaccc-tcaaggtacaattcatttttccacacattcttacacattca 17560812  T
Q  349 acctcattttctacaatgacttgag 373  Q
    ||||||||| ||||| |||||||||    
T  17560811 acctcatttcctacactgacttgag 17560787  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 40800273 - 40800163
Alignment:
Q  245 ccacatttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacaca 344  Q
    |||||||||| ||||  |||||||   ||||||| ||||| ||| |||||||  ||||||||| | ||||||||||||||||||  ||||||||||||||    
T  40800273 ccacatttcacggaagtcgttagcatctccttctcctata-taagggtgatttcgcgtcaccc-tcaaggtacgattcatttcctccacacttttacaca 40800176  T
Q  345 ttcaacctcattt 357  Q
     ||||| ||||||    
T  40800175 atcaacatcattt 40800163  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 13779107 - 13779150
Alignment:
Q  314 gtacgattcatttcccgcacacttttacacattcaacctcattt 357  Q
    |||| ||||||||||| || ||||||||||||||||||||||||    
T  13779107 gtacaattcatttcccacaaacttttacacattcaacctcattt 13779150  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 261 - 376
Target Start/End: Original strand, 5528333 - 5528446
Alignment:
Q  261 ccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttct 360  Q
    ||||| |||| ||||||| ||||| ||| ||||||| |||||||||| | ||||||||||| ||||| | ||||||||||||||||||||||||||| ||    
T  5528333 ccgttggcgcctccttctcctata-taagggtgattctgcgtcaccc-tcaaggtacgatttatttctcacacacttttacacattcaacctcatttcct 5528430  T
Q  361 acaatgacttgagtgt 376  Q
    ||  ||||||| ||||    
T  5528431 actctgacttgggtgt 5528446  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 27158363 - 27158293
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 376  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||  |||| |||||| |||||    
T  27158363 ccctcaaggtacaattcatttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgt 27158293  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 25410420 - 25410477
Alignment:
Q  315 tacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgag 373  Q
    ||||||||||||||| || | |||||||||||||| ||||||| ||||| |||||||||    
T  25410420 tacgattcatttcccacata-ttttacacattcaatctcatttcctacactgacttgag 25410477  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 35314124 - 35314180
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctac 362  Q
    |||| ||||||||||||||||||| |||| ||||  |||||||| ||||||| ||||    
T  35314124 ccctcaaggtacgattcatttcccacacatttttgtacattcaatctcatttcctac 35314180  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 248 - 357
Target Start/End: Complemental strand, 53402637 - 53402530
Alignment:
Q  248 catttcaaggaatccgttagcgcttccttcttctataataaaggtgattatgcgtcacccctaaaggtacgattcatttcccgcacacttttacacattc 347  Q
    ||||||| ||||  ||||||||| || |||| ||||| ||| |||||||  ||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  53402637 catttcacggaagacgttagcgcctcattctcctata-taagggtgatttcgcgtcaccc-tcaaggtacgattcatttcccacacacttttacacattc 53402540  T
Q  348 aacctcattt 357  Q
    | ||||||||    
T  53402539 atcctcattt 53402530  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 43543295 - 43543361
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttga 372  Q
    |||| ||| ||| ||||||||||| |||||| |||| ||| ||||||||||||||||| ||| ||||    
T  43543295 ccctcaagatacaattcatttcccacacactcttacgcatacaacctcattttctacactgatttga 43543361  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 39003245 - 39003175
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 376  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  39003245 ccctcaaggtacgattaatttcccacacacttttacacattcaacttcatttcctacactgatttgagtgt 39003175  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Complemental strand, 11714263 - 11714193
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgagtgt 376  Q
    |||| ||||||| |||||||||||  ||| |||||||||||||||||||||| |||||  |||||||||||    
T  11714263 ccctcaaggtacaattcatttcccatacatttttacacattcaacctcatttcctacacagacttgagtgt 11714193  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 30656068 - 30655967
Alignment:
Q  128 ggctagaaagtcagtcccataaagacacgtggacacggaaccctctgagcaagacattattatctgggcgaacacgctagttcccatgcatgtgaccgca 227  Q
    ||||| ||||||||||| |||||||||| || ||| | ||||||| ||| || |||||||    ||||  ||||| |||||||||||||| |||||||||    
T  30656068 ggctaaaaagtcagtccaataaagacacatgaacatgaaaccctcggagaaaaacattatggcttgggtaaacacactagttcccatgcacgtgaccgca 30655969  T
Q  228 ct 229  Q
    ||    
T  30655968 ct 30655967  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 7810151 - 7810216
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgacttgag 373  Q
    |||| |||||| ||||||||||  ||||||||||||||||||||| ||||||| |||| ||| |||||    
T  7810151 ccctgaaggtatgattcatttc--gcacacttttacacattcaacttcattttatacattgatttgag 7810216  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 33189548 - 33189502
Alignment:
Q  311 aaggtacgattcatttcccgcacacttttacacattcaacctcattt 357  Q
    ||||||||||||||||||| |||||||||||||| | || |||||||    
T  33189548 aaggtacgattcatttcccacacacttttacacactaaatctcattt 33189502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 34443358 - 34443309
Alignment:
Q  324 tttcccgcacacttttacacattcaacctcattttctacaatgacttgag 373  Q
    |||||| |||||||||||||||||||| |||||| ||||| |||||||||    
T  34443358 tttcccacacacttttacacattcaacttcatttcctacactgacttgag 34443309  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 34890011 - 34889947
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctacaatgactt 370  Q
    |||| |||||| ||||| |||||| ||| ||| ||||||||||||||||||| ||||| ||||||    
T  34890011 ccctcaaggtatgattcttttcccacacgcttgtacacattcaacctcatttcctacactgactt 34889947  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 26563003 - 26562952
Alignment:
Q  311 aaggtacgattcatttcccgcacacttttacacattcaacctcattttctac 362  Q
    ||||||||||| ||||||  |||||||||||||||| |||||||||| ||||    
T  26563003 aaggtacgatttatttcctacacacttttacacatttaacctcatttcctac 26562952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 12163687 - 12163744
Alignment:
Q  306 ccctaaaggtacgattcatttcccgcacacttttacacattcaacctcattttctaca 363  Q
    |||| ||| ||||||||||||||| || | |||||||||||||||| ||||| |||||    
T  12163687 ccctcaagttacgattcatttcccacataattttacacattcaaccccatttcctaca 12163744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 34890247 - 34890126
Alignment:
Q  114 ttttgttctagatcggctagaaagtcagtcccataaagacacgtggacacggaaccctctgagcaagacattattatctgggcgaacacgctagttccca 213  Q
    ||||| ||| || ||||||||||  || ||| ||||||||||||| | |||||||  || || |||||||||||     ||| ||||||||||||| |||    
T  34890247 ttttggtcttgaccggctagaaaaccaatcctataaagacacgtgaatacggaactatcggaccaagacattatggctagggtgaacacgctagtttcca 34890148  T
Q  214 tgcatgtgaccgcactcaagca 235  Q
    ||||  |||||| |||||||||    
T  34890147 tgcacatgaccggactcaagca 34890126  T

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