View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_31 (Length: 281)
Name: NF18364_low_31
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 32066049 - 32065783
Alignment:
| Q |
1 |
gtacctgaaggttatgagatgcataaagacaagagcatctaaaccggaggacgaaaagagttcatcctcagaaaggttccaagcttttgcaacccaatca |
100 |
Q |
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| T |
32066049 |
gtacctgaaggttatgagatgcataaagacaagagcatctaaaccggaggacgaaaagagttcatcctcagaaaggttccaagcttttgcaacccaatca |
32065950 |
T |
|
| Q |
101 |
ggagaaggtataagttgtttcaacttgaaaggnnnnnnnctagaaattccttcagctaacaaacgtggtatataaactttataattactcggttgtttcc |
200 |
Q |
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| T |
32065949 |
ggagaaggtataagttgtttcaacttgaaaggtttttttctagaaattccttcagctaacaaacgtggtatataaactttataattactcggttgtttcc |
32065850 |
T |
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| Q |
201 |
tcaaaatagaataaagtgtaaagaacaaaacacataaagcagtgtttattccaacagatgtcaaaag |
267 |
Q |
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| T |
32065849 |
tcaaaatagaataaagtgtaaagaacaaaacacataaagcagtgtttattccaacagatgtcaaaag |
32065783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 18699561 - 18699298
Alignment:
| Q |
1 |
gtacctgaaggttatgagatgcataaagacaagagcatctaaaccggaggacgaaaagagttcatcctcagaaaggttccaagcttttgcaacccaatca |
100 |
Q |
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| T |
18699561 |
gtacctgaaggttatgatacgcataaagacaacaccatctaaccctgatgatgagtacagctcctcctcagagagtttccaggctttagcaacccaacct |
18699462 |
T |
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| Q |
101 |
ggagaaggtataagttgtttcaacttgaaaggnnnnnnnc---tagaaattccttcagctaacaaacgtggtatataaactttataattactcggttgtt |
197 |
Q |
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| T |
18699461 |
gcagaaggtataagtctttcaaaattgaaatgactcctcctcttagaagttccttcaaccaacaagcgaggcacgtaaacttcataattgcttggttgct |
18699362 |
T |
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| Q |
198 |
tcctcaaaatagaataaagtgtaaagaacaaaacacataaagcagtgtttattccaacagatgt |
261 |
Q |
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||||||| |||||||| | ||| ||||| || ||||| ||||| ||||| || ||||||||||| |
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| T |
18699361 |
tcctcaatatagaatacaatgtcaagaataacacacacaaagctgtgttgatcccaacagatgt |
18699298 |
T |
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