View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_36 (Length: 252)

Name: NF18364_low_36
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_36
NF18364_low_36
[»] chr4 (14 HSPs)
chr4 (146-252)||(32066089-32066196)
chr4 (15-113)||(32066193-32066303)
chr4 (51-148)||(32066583-32066680)
chr4 (175-239)||(45128326-45128390)
chr4 (175-245)||(49219129-49219199)
chr4 (175-244)||(30207582-30207651)
chr4 (177-245)||(42866060-42866128)
chr4 (176-239)||(28423521-28423584)
chr4 (175-245)||(51197492-51197561)
chr4 (199-244)||(25309550-25309595)
chr4 (175-232)||(36048523-36048580)
chr4 (175-252)||(43824273-43824350)
chr4 (175-239)||(11158373-11158437)
chr4 (179-251)||(29263364-29263436)
[»] chr7 (10 HSPs)
chr7 (176-245)||(44151490-44151559)
chr7 (180-245)||(46056020-46056085)
chr7 (176-229)||(27481320-27481373)
chr7 (175-252)||(38010704-38010781)
chr7 (172-210)||(39711451-39711489)
chr7 (177-250)||(28165083-28165156)
chr7 (177-245)||(15075095-15075163)
chr7 (178-234)||(30812141-30812197)
chr7 (180-252)||(33645964-33646035)
chr7 (199-247)||(37064228-37064276)
[»] chr6 (8 HSPs)
chr6 (175-252)||(28088225-28088302)
chr6 (175-252)||(281851-281928)
chr6 (175-210)||(1402986-1403021)
chr6 (194-252)||(6647396-6647454)
chr6 (194-244)||(7931800-7931850)
chr6 (198-239)||(1408283-1408324)
chr6 (215-252)||(7945887-7945924)
chr6 (175-239)||(3168277-3168341)
[»] chr1 (15 HSPs)
chr1 (175-252)||(33723385-33723462)
chr1 (175-245)||(12564884-12564954)
chr1 (175-245)||(23902077-23902147)
chr1 (175-245)||(39347977-39348047)
chr1 (175-252)||(25479571-25479648)
chr1 (176-244)||(45205059-45205127)
chr1 (178-245)||(6279392-6279459)
chr1 (179-238)||(8130430-8130489)
chr1 (194-252)||(43029405-43029463)
chr1 (194-239)||(5047155-5047200)
chr1 (175-244)||(25005808-25005877)
chr1 (175-245)||(28689462-28689534)
chr1 (188-229)||(29834931-29834972)
chr1 (178-239)||(35590908-35590969)
chr1 (185-250)||(44251536-44251601)
[»] chr8 (9 HSPs)
chr8 (175-239)||(7645968-7646032)
chr8 (178-245)||(8062322-8062389)
chr8 (175-239)||(39561557-39561621)
chr8 (180-239)||(7918789-7918848)
chr8 (175-210)||(31884584-31884619)
chr8 (194-252)||(8536045-8536103)
chr8 (180-252)||(12851171-12851243)
chr8 (186-238)||(39881769-39881821)
chr8 (175-252)||(43704379-43704458)
[»] chr5 (17 HSPs)
chr5 (177-252)||(18704039-18704114)
chr5 (181-245)||(18906338-18906402)
chr5 (175-231)||(32408616-32408672)
chr5 (175-251)||(37588364-37588440)
chr5 (195-247)||(38104865-38104917)
chr5 (179-239)||(19138733-19138795)
chr5 (194-252)||(11707064-11707122)
chr5 (175-229)||(29054898-29054952)
chr5 (175-252)||(37690639-37690717)
chr5 (178-252)||(37794701-37794774)
chr5 (194-239)||(8985670-8985715)
chr5 (198-251)||(19460580-19460633)
chr5 (177-229)||(34205231-34205284)
chr5 (175-232)||(41016169-41016226)
chr5 (178-238)||(34975357-34975417)
chr5 (188-252)||(37611218-37611282)
chr5 (188-252)||(37787948-37788012)
[»] chr2 (8 HSPs)
chr2 (175-238)||(30552661-30552724)
chr2 (177-244)||(43635112-43635179)
chr2 (175-252)||(22681188-22681265)
chr2 (175-230)||(9556229-9556284)
chr2 (175-246)||(11513888-11513959)
chr2 (201-252)||(41809248-41809299)
chr2 (175-252)||(5043563-5043640)
chr2 (175-252)||(33942140-33942217)
[»] chr3 (12 HSPs)
chr3 (175-245)||(38462271-38462341)
chr3 (175-248)||(27792862-27792935)
chr3 (175-252)||(45432942-45433019)
chr3 (175-245)||(237387-237457)
chr3 (175-245)||(23785245-23785315)
chr3 (177-239)||(43115048-43115110)
chr3 (178-251)||(34382935-34383008)
chr3 (181-246)||(40122762-40122827)
chr3 (175-239)||(14548737-14548801)
chr3 (176-252)||(21574482-21574557)
chr3 (195-247)||(23793594-23793646)
chr3 (177-229)||(29113454-29113506)
[»] scaffold0020 (1 HSPs)
scaffold0020 (175-252)||(159976-160053)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 32066196 - 32066089
Alignment:
Q  146 aatactatggtcttttaaataagcccttgtcatataagctataaattctttt-cataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32066196 aatactatggccttttaaataagcccttgtcatataagctataaattctttttcataagctatcatgtaaagcttatggaaataagcttaaaacatctta 32066097  T
Q  245 taaacatg 252  Q
    ||||||||    
T  32066096 taaacatg 32066089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 32066303 - 32066193
Alignment:
Q  15 aatatcaacctcttctagctgattcccccaacaattcacaag------------gatcccaataaccccatcaaaagtaaatattttcaaaccgcaagca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  32066303 aatatcaacctcttctagctgattcccccaacaattcacaagaactagcacaaggatcccaataaccccatcaaaagtaaatattttcaaaccgcaagca 32066204  T
Q  103 ttcaagaaata 113  Q
    |||||||||||    
T  32066203 ttcaagaaata 32066193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 32066680 - 32066583
Alignment:
Q  51 cacaaggatcccaataaccccatcaaaagtaaatattttcaaaccgcaagcattcaagaaataacacaactaaggctaaataagagcttctgatcaat 148  Q
    ||||| |||||||||||||||| ||||||||||||||||||| | |||  |||||||||||||| |||||| || ||||||||||||||||| |||||    
T  32066680 cacaaagatcccaataaccccagcaaaagtaaatattttcaagctgcacacattcaagaaataatacaactcagtctaaataagagcttctgctcaat 32066583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 45128390 - 45128326
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||||||||||||||| ||||||||| || || ||||||||||||||||||||||| ||||||    
T  45128390 tcatataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaaca 45128326  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 49219129 - 49219199
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||||| || ||||||||| ||||| || | || ||||||||||||||| |||||| |||||    
T  49219129 tcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttat 49219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 30207651 - 30207582
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    ||||||||||||||| || ||||||||||||| | || | || ||||||||||||||| |||||| ||||    
T  30207651 tcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagctta 30207582  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 42866060 - 42866128
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||| || ||||||||||||||| |  | ||||||||||| |||||| ||| ||||||||    
T  42866060 atataagctataagttgttttcataagctatccttgagagcttatggaagtaagctaaaagcatcttat 42866128  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 28423521 - 28423584
Alignment:
Q  176 catataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    ||||||||||||| ||| ||||| ||||||||||| || || ||||| ||||||||| ||||||    
T  28423521 catataagctatacattgttttcctaagctatcatgtagagtttatgaaaataagctgaaaaca 28423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 51197561 - 51197492
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||||||||||||| ||| |||||||||  ||||||  | |||||||||||||||||| |||||| |||||    
T  51197561 tcatataagctatacattgttttcataatttatcatc-agagcttatggaaataagctaaaaacagcttat 51197492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 25309550 - 25309595
Alignment:
Q  199 ataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    |||| |||||||  ||||||||||||||||||||||||||| ||||    
T  25309550 ataaactatcatggaaagcttatggaaataagcttaaaacagctta 25309595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 36048523 - 36048580
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagct 232  Q
    |||||||||||||||  | |||||| |||||||| || | ||||||||||||||||||    
T  36048523 tcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagct 36048580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 43824273 - 43824350
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||| |||||  | ||||| |||| |||| |  |||||||||||||||||||| |||||| ||||| ||||||    
T  43824273 tcatataagttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaaaacaacttatgaacatg 43824350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 11158437 - 11158373
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    ||||| ||| ||||| || ||||||||||||||| || | ||||| |||||||||||| ||||||    
T  11158437 tcatacaagttataagttgttttcataagctatcttagagagcttgtggaaataagctgaaaaca 11158373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 29263364 - 29263436
Alignment:
Q  179 ataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacat 251  Q
    |||||| |||| || ||||||||||||||| |  | ||||| |||||||||||| |||||| ||||| |||||    
T  29263364 ataagcgataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacat 29263436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 44151559 - 44151490
Alignment:
Q  176 catataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||||||||||||| || ||||||||| ||||| |  |||||||||||||||||||| ||||||||||||    
T  44151559 catataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttat 44151490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 46056085 - 46056020
Alignment:
Q  180 taagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||| |||||||||||||||   || |||||||||||||||||| ||||||| ||||    
T  46056085 taagctataaattgttttcataagctatcccgtagagcttatggaaataagctaaaaacatattat 46056020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 27481373 - 27481320
Alignment:
Q  176 catataagctataaattcttttcataagctatcatataaagcttatggaaataa 229  Q
    |||||||||||||| || |||||||||||||||||  | |||||||||||||||    
T  27481373 catataagctataagttattttcataagctatcatggatagcttatggaaataa 27481320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 38010704 - 38010781
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||||  | ||||||||| ||||| || | | |||||||||||||||| |||||| ||||| ||||||    
T  38010704 tcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatg 38010781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 39711489 - 39711451
Alignment:
Q  172 ttgtcatataagctataaattcttttcataagctatcat 210  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  39711489 ttgtcatataagctataaattgttttcataaactatcat 39711451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 28165083 - 28165156
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaaca 250  Q
    |||||||||||||| | | || ||||||||||||  | |||||||||||||||| | |||||| ||||| ||||    
T  28165083 atataagctataaactgtctttataagctatcatggagagcttatggaaataagttgaaaacagcttatgaaca 28165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 15075163 - 15075095
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||| ||||| || ||||||||| ||| | || | |||||||||||||||||| |||||| |||||    
T  15075163 atataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagcttat 15075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 30812141 - 30812197
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagctta 234  Q
    ||||||||||||  | ||||||| |||||||||  | ||||||||||||||||||||    
T  30812141 tataagctataagctgttttcattagctatcatggagagcttatggaaataagctta 30812197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 33646035 - 33645964
Alignment:
Q  180 taagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||| | ||||||||||||||| |  | ||||||||||||||| || |||||| |||||| |||||    
T  33646035 taagctataaactgttttcataagctatc-tggagagcttatggaaataacctaaaaacaacttatagacatg 33645964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 37064276 - 37064228
Alignment:
Q  199 ataagctatcatataaagcttatggaaataagcttaaaacatcttataa 247  Q
    ||||||||||||| | |||||||| |||||| ||||||||| |||||||    
T  37064276 ataagctatcatagagagcttatgaaaataaacttaaaacaacttataa 37064228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 28088302 - 28088225
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||||| | |||||||||||||||||  | |||| ||||||||||||| |||||| | |||| |||||    
T  28088302 tcatataagctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaacaacctatagacatg 28088225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 281928 - 281851
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||||  | | ||||||||||||| || | |||| ||||||||||||| |||||| |||||| |||||    
T  281928 tcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatg 281851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 1402986 - 1403021
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcat 210  Q
    |||||||||||||||||| |||||||||||||||||    
T  1402986 tcatataagctataaattgttttcataagctatcat 1403021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 6647396 - 6647454
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||||| || | |||||||| ||||||| | |||||||||||| ||||||    
T  6647396 ttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatg 6647454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 7931850 - 7931800
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    |||||| |||||||| |||| |||||||||||||||||| |||||| ||||    
T  7931850 ttttcacaagctatcctatagagcttatggaaataagctgaaaacaactta 7931800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 1408324 - 1408283
Alignment:
Q  198 cataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||| ||||||||| |||||||||||||||||| ||||||    
T  1408324 cataagttatcatatagagcttatggaaataagctgaaaaca 1408283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 7945924 - 7945887
Alignment:
Q  215 agcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||||||||||||||| || |||||||||    
T  7945924 agcttatggaaataagcttaaaacaactaataaacatg 7945887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 3168341 - 3168277
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||||||||||||| | ||||| ||||||||| |  | |||||| ||||||||||| ||||||    
T  3168341 tcatataagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaaca 3168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 33723462 - 33723385
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||| |||| || | ||||||||||||| | | ||||||||||||||||||||| ||||||||| || ||||||    
T  33723462 tcatataaactatgaactgttttcataagctaccctgtaaagcttatggaaataagctgaaaacatctcatgaacatg 33723385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 12564954 - 12564884
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||||| || ||||||||||||||| | ||  ||||| ||||||||||| |||||| |||||    
T  12564954 tcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagcttat 12564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 23902147 - 23902077
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||||| || |||||| |||||||| || | ||||||||||| |||||| |||||| |||||    
T  23902147 tcatataagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaacttat 23902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 39348047 - 39347977
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||| ||||||||| || ||||||||| ||||| |  |||||||||||||||||||| |||||| |||||    
T  39348047 tcatacaagctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaacttat 39347977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 25479571 - 25479648
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||| ||||||| || ||||||||||||||| || | |||||||| ||||||||| |||||| || || ||||||    
T  25479571 tcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatg 25479648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 45205059 - 45205127
Alignment:
Q  176 catataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    ||||||||||| || || ||||||||||||||||| || || | ||||||||||||| |||||| ||||    
T  45205059 catataagctagaagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaactta 45205127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 6279392 - 6279459
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||||||| |||| | ||||||||||||||| || | |||||||||||||| ||| |||||| |||||    
T  6279392 tataagctttaaactattttcataagctatcctagagagcttatggaaatacgctgaaaacaacttat 6279459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 8130430 - 8130489
Alignment:
Q  179 ataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaac 238  Q
    ||||||||||| || |||||||||||||||||  ||| |||||||||| ||||| |||||    
T  8130430 ataagctataagttgttttcataagctatcatggaaaacttatggaaacaagctgaaaac 8130489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 43029463 - 43029405
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||||  | ||||||||||||||||||||| |||| | |||||| |||||    
T  43029463 ttttcataagctattctttaaagcttatggaaataagctgaaaatagcttatagacatg 43029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 5047155 - 5047200
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||||||||||||||  | |||||||||||||||||| ||||||    
T  5047155 ttttcataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 25005877 - 25005808
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    ||||||||||||||| || ||||||||||||||| |  | |||||||  ||| |||||||||| ||||||    
T  25005877 tcatataagctataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaatatctta 25005808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 28689534 - 28689462
Alignment:
Q  175 tcatataagctataaattcttttc--ataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||||| || |||||  |||||||||| |  |||||||||| ||||||||| |||||| |||||    
T  28689534 tcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttat 28689462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 29834972 - 29834931
Alignment:
Q  188 aaattcttttcataagctatcatataaagcttatggaaataa 229  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  29834972 aaattgttttcataagctatcatgtagagcttatggaaataa 29834931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 35590969 - 35590908
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||||||||| |   ||||||||||||||||  | |||||||||||||||||| ||||||    
T  35590969 tataagctataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaaca 35590908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 44251536 - 44251601
Alignment:
Q  185 tataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaaca 250  Q
    ||||| || ||||||||||||| |||| |||| |||| |||||||||| |||| | ||||||||||    
T  44251536 tataagttgttttcataagctagcataaaaagattatagaaataagctgaaaaaaacttataaaca 44251601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 7645968 - 7646032
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||| |||||||||| || ||||||||||||| | | ||||||||||||||||||||| ||||||    
T  7645968 tcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaataagctgaaaaca 7646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 8062322 - 8062389
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||||||||  | ||||||||||||||| || | || ||||||||||||||| ||||||||||||    
T  8062322 tataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttat 8062389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 39561621 - 39561557
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||| ||| |||||| || ||||| |||||||||||  |||||||||||||||||||| ||||||    
T  39561621 tcatctaaactataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaaca 39561557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 7918848 - 7918789
Alignment:
Q  180 taagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    |||||||||| || ||||||||||||||| | || ||||| |||||||||||| ||||||    
T  7918848 taagctataagttgttttcataagctatcttgtagagcttgtggaaataagctgaaaaca 7918789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 31884584 - 31884619
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcat 210  Q
    |||||||||||||||||| |||||||||||||||||    
T  31884584 tcatataagctataaattgttttcataagctatcat 31884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 8536103 - 8536045
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||||||| | || ||||||| |||||||||||| | |||| |||||||    
T  8536103 ttttcataagctatcatagagagtttatggagataagcttaaaatagcttagaaacatg 8536045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 12851171 - 12851243
Alignment:
Q  180 taagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||| ||||| |||||||||||| || |  | |||||||| ||||||||  |||||||||||| ||||||    
T  12851171 taagctagaaattgttttcataagctttccttgagagcttatgaaaataagccgaaaacatcttatgaacatg 12851243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 39881821 - 39881769
Alignment:
Q  186 ataaattcttttcataagctatcatataaagcttatggaaataagcttaaaac 238  Q
    ||||||| |||| ||||||||||||  | |||||||||||||||||| |||||    
T  39881821 ataaattgtttttataagctatcatggagagcttatggaaataagctgaaaac 39881769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 43704458 - 43704379
Alignment:
Q  175 tcatataagctataaattcttttcataagc--tatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||| |||||| || ||||||||||   |||| |  |||||||||||||||||||||||||||  |||| ||||||    
T  43704458 tcatataaactataagttgttttcataagagttatcctcaaaagcttatggaaataagcttaaaacagtttatgaacatg 43704379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 18704114 - 18704039
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||| || |||||||||||||| | | | | |||||||||||||||| |||||| |||||| |||||    
T  18704114 atataagctataagttgttttcataagctattacaaagatcttatggaaataagctgaaaacaacttatagacatg 18704039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 18906338 - 18906402
Alignment:
Q  181 aagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||||||||| | ||||||||||||||| |  ||||||||| |||||||||| |||||| |||||    
T  18906338 aagctataaactgttttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttat 18906402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 32408672 - 32408616
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagc 231  Q
    |||||||||||||||| | ||||||||||||||| |  | |||||||||||||||||    
T  32408672 tcatataagctataaactattttcataagctatcctgaagagcttatggaaataagc 32408616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 37588440 - 37588364
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacat 251  Q
    ||||||||||||||| || |||||||||| |||  |  | |||||||||||||||||| |||||| ||||| |||||    
T  37588440 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttattaacat 37588364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 38104917 - 38104865
Alignment:
Q  195 tttcataagctatcatataaagcttatggaaataagcttaaaacatcttataa 247  Q
    |||||||||||||| || | |||||||||||||||||| |||||| |||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaacaacttataa 38104865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 19138795 - 19138733
Alignment:
Q  179 ataagctataaattcttttcataagctatcatat--aaagcttatggaaataagcttaaaaca 239  Q
    ||||||||||| || |||||||||||||| ||||  | |||||||||||||||||| ||||||    
T  19138795 ataagctataagttgttttcataagctattatatggagagcttatggaaataagctgaaaaca 19138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 11707064 - 11707122
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||||| | || ||||| || ||||||||| |||||| ||||||||||||    
T  11707064 ttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatg 11707122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 29054898 - 29054952
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataa 229  Q
    ||||||||||||||| || ||| ||||| ||||||| || |||||||||||||||    
T  29054898 tcatataagctataagttgtttccataaactatcatgtagagcttatggaaataa 29054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 37690717 - 37690639
Alignment:
Q  175 tcatataagctataaattcttttcataa-gctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||||||| || ||||||||| | ||| ||  | |||||||||||||||||| |||||| ||||| ||||||    
T  37690717 tcatataagctataagttgttttcataaagttattatggagagcttatggaaataagctgaaaacagcttattaacatg 37690639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 37794774 - 37794701
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||||| ||| ||||||| ||||||| |||| || |||| |||||||||| |||||| ||||| ||||||    
T  37794774 tataagctatagattattttcatgagctatcctatagag-ttatcgaaataagctcaaaacagcttatgaacatg 37794701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 8985670 - 8985715
Alignment:
Q  194 ttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    ||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  8985670 ttttcataagctatcctatagagcttatggaaagaagctgaaaaca 8985715  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 19460580 - 19460633
Alignment:
Q  198 cataagctatcatataaagcttatggaaataagcttaaaacatcttataaacat 251  Q
    |||||||||||||  | ||||||||||||| |||| |||||||||||| |||||    
T  19460580 cataagctatcatggagagcttatggaaatgagctgaaaacatcttatgaacat 19460633  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 34205231 - 34205284
Alignment:
Q  177 atataagctataaattcttttcataagctatcat-ataaagcttatggaaataa 229  Q
    ||||||||||||| || ||||||||||||||| | | |||||||||||||||||    
T  34205231 atataagctataagttgttttcataagctatcttgaaaaagcttatggaaataa 34205284  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 41016169 - 41016226
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagct 232  Q
    ||||||||||||||| || |||||| |||| |||||  |||||||||| |||||||||    
T  41016169 tcatataagctataagttgttttcacaagccatcatggaaagcttatgaaaataagct 41016226  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 34975357 - 34975417
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaac 238  Q
    ||||||||||||||| ||||| ||||||||| |  | |||| ||||||||||||| |||||    
T  34975357 tataagctataaattgttttcgtaagctatcctggagagctaatggaaataagctgaaaac 34975417  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 37611282 - 37611218
Alignment:
Q  188 aaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||| ||||||||||||||| |  | ||||||||||||||| || |||||| ||||| ||||||    
T  37611282 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatg 37611218  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 37788012 - 37787948
Alignment:
Q  188 aaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||| ||||||||||||||| |  | ||||||||||||||| || |||||| ||||| ||||||    
T  37788012 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatg 37787948  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 30552724 - 30552661
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaac 238  Q
    |||||| ||||||||||| ||||||||| ||||| || | |||||||||||||||||| |||||    
T  30552724 tcatatcagctataaattattttcataaactatcctagagagcttatggaaataagctaaaaac 30552661  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 43635179 - 43635112
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatctta 244  Q
    ||||| ||||||| || || ||||||||||||||  |||||||||| |||||||||||||||| ||||    
T  43635179 atatacgctataagttgttctcataagctatcatgaaaagcttatgaaaataagcttaaaacagctta 43635112  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 22681265 - 22681188
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||||  | ||||||||| ||||| || | | |||||||||||||||| |||||| ||||| ||||||    
T  22681265 tcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaacatg 22681188  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 9556229 - 9556284
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataag 230  Q
    ||||| |||||||||| | ||||||||||||||| || |||||||||| |||||||    
T  9556229 tcatacaagctataaactgttttcataagctatcctagaaagcttatgaaaataag 9556284  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 11513888 - 11513959
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttata 246  Q
    ||||||||||||||| || |||||||||||||||||  | | ||| |||||||||||| |||| | ||||||    
T  11513888 tcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagcttata 11513959  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 41809299 - 41809248
Alignment:
Q  201 aagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||| || |||||||||||||||||||| |||||| ||||| ||||||    
T  41809299 aagctatcttagaaagcttatggaaataagctaaaaacaacttatgaacatg 41809248  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 5043640 - 5043563
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||| || || |||||||||||||||||  | |||| ||| || | ||||||||||| |||||| |||||    
T  5043640 tcatataagctagaagttgttttcataagctatcatggatagctaatgaaagttagcttaaaacaacttatatacatg 5043563  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 33942140 - 33942217
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||| |||||||||| || ||||||||||| |||||| | |||| ||| |||| |||| |||||| ||||| ||||||    
T  33942140 tcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagcttatgaacatg 33942217  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 38462271 - 38462341
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    ||||||| |||||||| | |||||||||||||||  | | |||||||||||||||||| |||||| |||||    
T  38462271 tcatatatgctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaacttat 38462341  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 27792862 - 27792935
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaa 248  Q
    |||||||||||  || || ||||||||| ||||||| || ||||||| |||||||||| |||||| ||||||||    
T  27792862 tcatataagctgcaagttgttttcataaactatcatgtagagcttatagaaataagctgaaaacaacttataaa 27792935  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 45433019 - 45432942
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||| ||||||||||| |||||| |||  ||| | || |||||||||||||||||| |||||| ||||| ||||||    
T  45433019 tcatatgagctataaattgttttcacaagtcatcctgtagagcttatggaaataagctgaaaacaacttatgaacatg 45432942  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 237387 - 237457
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||| |||| ||||| || |||||||||| |||| |||| |||||| ||||||||||| |||||| |||||    
T  237387 tcatgtaagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagcttat 237457  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 23785245 - 23785315
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttat 245  Q
    |||||||||||||||| | |||||| ||||| ||||  | |||||||||||| ||||| |||||| |||||    
T  23785245 tcatataagctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaacaacttat 23785315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 43115048 - 43115110
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    ||||||||||||| || ||||||| | |||||||  | |||||||||||||||||| ||||||    
T  43115048 atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaaaaca 43115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 34382935 - 34383008
Alignment:
Q  178 tataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacat 251  Q
    |||||| ||||| |||||||||||||||||| |  |||||||| | ||||||| | |||||| |||||| ||||    
T  34382935 tataagttataagttcttttcataagctatcctgaaaagcttaagaaaataagatgaaaacaacttatagacat 34383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 40122827 - 40122762
Alignment:
Q  181 aagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttata 246  Q
    ||||||||| || |||| |||||||||| || |||| | ||||||||||||| |||||| ||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttata 40122762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 14548801 - 14548737
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaaca 239  Q
    ||||||||||||||| || |||||||||| |||  |  | |||||||||||||||||| ||||||    
T  14548801 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 21574482 - 21574557
Alignment:
Q  176 catataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    |||||||||||||| || |||| |||||||| |||  | |||||||||||||||||| ||| || ||||| ||||||    
T  21574482 catataagctataacttttttt-ataagctaacatggagagcttatggaaataagctaaaagcagcttatgaacatg 21574557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 23793594 - 23793646
Alignment:
Q  195 tttcataagctatcatataaagcttatggaaataagcttaaaacatcttataa 247  Q
    |||||||||||||| |  ||||||||| |||||||||| |||||| |||||||    
T  23793594 tttcataagctatcttggaaagcttatagaaataagctgaaaacaacttataa 23793646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 29113454 - 29113506
Alignment:
Q  177 atataagctataaattcttttcataagctatcatataaagcttatggaaataa 229  Q
    |||||||||||||||| | |||||||||| || || |||||||||| ||||||    
T  29113454 atataagctataaattttgttcataagctgtcctagaaagcttatgaaaataa 29113506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 160053 - 159976
Alignment:
Q  175 tcatataagctataaattcttttcataagctatcatataaagcttatggaaataagcttaaaacatcttataaacatg 252  Q
    ||||||||| |||||  | ||||||||||||||| || | ||||| |||||||||||| |||||  |||||| |||||    
T  160053 tcatataagttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatg 159976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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