View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_37 (Length: 231)
Name: NF18364_low_37
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 8360870 - 8360707
Alignment:
| Q |
1 |
aagtacgtaacattcaattcatatatgttgacctaattttttacttttgccttgtataatctcttggctggttgcttgacagaaacaaaaagcaaacaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8360870 |
aagtacgtaacattcaattcatatatgttgacctaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaat |
8360771 |
T |
|
| Q |
101 |
acttcagatatatagtttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
168 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8360770 |
actt----tagatagtttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
8360707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 38412538 - 38412375
Alignment:
| Q |
1 |
aagtacgtaacattcaattcatatatgttgacctaattttttacttttgccttgtataatctcttggctggttgcttgacagaaacaaaaagcaaacaat |
100 |
Q |
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|||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38412538 |
aagtacataacattcaattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaat |
38412439 |
T |
|
| Q |
101 |
acttcagatatatagtttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
168 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38412438 |
acttcagatat----tttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
38412375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 8360698 - 8360664
Alignment:
| Q |
182 |
aatagtaacccaaagtctctaagttcggtggttaa |
216 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
8360698 |
aatagtaacccaaagtctctaagtttggtggttaa |
8360664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 38412360 - 38412326
Alignment:
| Q |
182 |
aatagtaacccaaagtctctaagttcggtggttaa |
216 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
38412360 |
aatagtaacccaaagtctctaagtttggtggttaa |
38412326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 34612108 - 34612271
Alignment:
| Q |
1 |
aagtacgtaacattcaattcatatatgttgacctaattttttacttttgccttgtataatctcttggctggttgcttgacagaaacaaaaagcaaacaat |
100 |
Q |
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|
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34612108 |
aagtacataacattcaattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaat |
34612207 |
T |
|
| Q |
101 |
acttcagatatatagtttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
168 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34612208 |
acttcagatat----tttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
34612271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 34612286 - 34612320
Alignment:
| Q |
182 |
aatagtaacccaaagtctctaagttcggtggttaa |
216 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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| T |
34612286 |
aatagtaacccaaagtctctaagtttggtggttaa |
34612320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26908855 - 26908692
Alignment:
| Q |
1 |
aagtacgtaacattcaattcatatatgttgacctaattttttacttttgccttgtataatctcttggctggttgcttgacagaaacaaaaagcaaacaat |
100 |
Q |
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|
|||||| ||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26908855 |
aagtacataacattcaattcatatatgttggcttaattttttactattgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaat |
26908756 |
T |
|
| Q |
101 |
acttcagatatatagtttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
168 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26908755 |
acttcagatat----tttatttttattaatcccatttagataataaaaatcgattcccatgaagaatt |
26908692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 26908677 - 26908643
Alignment:
| Q |
182 |
aatagtaacccaaagtctctaagttcggtggttaa |
216 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
26908677 |
aatagtaacccaaagtctctaagtttggtggttaa |
26908643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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