View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_38 (Length: 227)
Name: NF18364_low_38
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 35490880 - 35491089
Alignment:
| Q |
1 |
cttgcttttcctaatggtgttgctctaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggac |
100 |
Q |
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| T |
35490880 |
cttgcttttcctaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggac |
35490979 |
T |
|
| Q |
101 |
caaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattcatc |
200 |
Q |
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| T |
35490980 |
caaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattcatc |
35491079 |
T |
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| Q |
201 |
agctgtaaag |
210 |
Q |
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|||||||||| |
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| T |
35491080 |
agctgtaaag |
35491089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35503715 - 35503906
Alignment:
| Q |
1 |
cttgcttttcctaatggtgttgctctaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggac |
100 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||| ||||| |||||||||||| ||||| |
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| T |
35503715 |
cttgcttttcccaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacttcgacttgcaagattctgaggctttggcttcgtggac |
35503814 |
T |
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| Q |
101 |
caaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
192 |
Q |
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| T |
35503815 |
caaatgctggccaagtcgatacttttgctgttcttccaggctttccagacaatgtaaggagaaattcagaagggcaattttgggttgctttg |
35503906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 35512352 - 35512543
Alignment:
| Q |
6 |
ttttcctaatggtgttgctctaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggaccaaaa |
105 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| | | |||| ||||| ||||||||||| ||||||| || |
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| T |
35512352 |
ttttcccaatggtgttgctttaagcaaagatggttcatttcttctggtagccgaaacctcgattagcaggattctgaggctttggcttaatggacctaat |
35512451 |
T |
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| Q |
106 |
gctggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattc |
197 |
Q |
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| ||| || || |||||||| || ||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||| |||| |
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| T |
35512452 |
gttggccaaatcgatacttttgctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattc |
35512543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 40161395 - 40161578
Alignment:
| Q |
9 |
tcctaatggtgttgctctaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggaccaaaagct |
108 |
Q |
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||||||||||||| | |||||||||| |||| ||| ||||| |||| ||||||||| | || | | |||||||| |||||||||||||| || || ||| |
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| T |
40161395 |
tcctaatggtgtttgtttaagcaaagacggtttattccttctagtaggtgaaacctcgactttccggattcttcgactttggcttcatggccctaatgct |
40161494 |
T |
|
| Q |
109 |
ggtaaagtcagtacttttgttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttg |
192 |
Q |
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||| |||||| |||||||| | ||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
40161495 |
ggtcaagtcaatacttttgccgttcttccaggttatccggacaatataaggagaaattcagatgggcagttttgggttgctttg |
40161578 |
T |
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