View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18364_low_6 (Length: 538)
Name: NF18364_low_6
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18364_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 18617813 - 18618310
Alignment:
| Q |
18 |
ctatctcctagcttcaccaatcgcagcgattctctactacttcatctccgaatcagccggaattcaagtccttgtcttcgcgtcgatggcaggaatgaaa |
117 |
Q |
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| T |
18617813 |
ctatctcctagcttcaccaatagccgcgattctctactacttcatctctgaatcagccggaattcaagtccttgtcttcgcgtcgatggcaggaatgaaa |
18617912 |
T |
|
| Q |
118 |
ctttcaagcatagaatcagtagcaagagcagttcttccaaaattctattcatctgaccttcaccctgagacatggcgcgtgttttcgtcgtgtgggaaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18617913 |
ctttcaagcatagaatcagtagcaagagcagttcttccaaaattctattcatctgaccttcacccagagacatggcgcgtgttttcgtcgtgtgggaaac |
18618012 |
T |
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| Q |
218 |
gttgtgttctcaccgcgaatccaaggatcatggtggagccttttttgaaggaatttttgggggctgatatggttttgggaactgaaattgctagttataa |
317 |
Q |
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| T |
18618013 |
gctgtgttctcaccgcgaatccaaggatcatggtagagccttttttgaaggaatttttgggggctgatatggttttgggaactgaaattgctagttataa |
18618112 |
T |
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| Q |
318 |
agggagagctactggattgatttgtaaacctggaatacttgttggagataagaaagctcaagttcttaaggaaacttttggtgatgaaaagccagatatt |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
18618113 |
gggaagagctactggattgatttgtaaacctggaatacttgttggagataagaaagctcaagttcttaagaaaacttttggtgatgaaaagcctgatatt |
18618212 |
T |
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| Q |
418 |
ggacttggtgatagagtcactgatgctcccttcatggctttgtgtaaggtaatattaaacagtccaactatctaaatcaataacatcatccttttggt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
18618213 |
ggacttggtgatagagtcactgatgctcccttcatggctttgtgcaaggtaatattaatcagtccaactatctaaatcaataaaatcatccttttggt |
18618310 |
T |
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