View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_8 (Length: 520)

Name: NF18364_low_8
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_8
NF18364_low_8
[»] chr7 (3 HSPs)
chr7 (21-220)||(11672185-11672385)
chr7 (403-508)||(47109325-47109430)
chr7 (284-401)||(47109610-47109728)
[»] chr8 (1 HSPs)
chr8 (403-465)||(27266211-27266273)
[»] chr4 (1 HSPs)
chr4 (21-161)||(55876870-55877012)
[»] chr1 (1 HSPs)
chr1 (1-51)||(32440425-32440475)
[»] chr3 (2 HSPs)
chr3 (1-47)||(11394246-11394292)
chr3 (1-45)||(46233745-46233789)
[»] chr2 (1 HSPs)
chr2 (1-47)||(9208798-9208844)
[»] chr5 (3 HSPs)
chr5 (430-473)||(34025669-34025712)
chr5 (3-121)||(21592475-21592595)
chr5 (3-121)||(21596592-21596712)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 11672185 - 11672385
Alignment:
Q  21 ctcttttcctcttccacaaattctcaccc-aaaaaccctaaccacctccctcatcctccatgaactcactctaccccaccctaacaacatcctcgacatc 119  Q
    ||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||| ||||| ||||||| || |||| ||||||||||    
T  11672185 ctctttttctcttccacaaattctcaccccaaaaaccccaaccgcctccctcatcctccctgaactccctctatcccaccccaataacaccctcgacatc 11672284  T
Q  120 cattatctcctccaacgtcctacacgccgcagctcaaaaccccacccccggtcaccgtgcttacgtcgtcgtagaagttattctccgccgtatcaccacc 219  Q
    || | |||||| |||||||| || |||||||||||||||||| ||||||  | | || ||||| ||||  ||||||||||||||| ||||||||||||||    
T  11672285 cactctctcctacaacgtcccactcgccgcagctcaaaaccctaccccccattaacgcgcttatgtcgcagtagaagttattctctgccgtatcaccacc 11672384  T
Q  220 a 220  Q
    |    
T  11672385 a 11672385  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 403 - 508
Target Start/End: Complemental strand, 47109430 - 47109325
Alignment:
Q  403 ttttagttttgtatttgatttgatttatttattgtgaaatttagcactcaccaagtgtttgagaaaatgtcacagtaaaaagaatgttatttttgatatt 502  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47109430 ttttagttttgtatttgacttgatttatttactgtgaaatttagcactcaccaagtgtttgagaaaatgtcacagtaaaaagaatgttagttttgatatt 47109331  T
Q  503 gatttt 508  Q
    ||||||    
T  47109330 gatttt 47109325  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 47109728 - 47109610
Alignment:
Q  284 aaccactctctgatgatatcgacggcgaagatgagcgctaacggcgagagaggtacgaattctaaatcctttt-gtctttgaattcatgattcgtgttca 382  Q
    |||||||||||||||||||||||| |||||| |  |||||||||| ||||||||| || |||||||||||||| |||||||||||||||||| |||||||    
T  47109728 aaccactctctgatgatatcgacgacgaagaagcacgctaacggcaagagaggtaagatttctaaatcctttttgtctttgaattcatgatttgtgttca 47109629  T
Q  383 tgttcaagctattgaaatc 401  Q
    |||||||||||||||||||    
T  47109628 tgttcaagctattgaaatc 47109610  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 403 - 465
Target Start/End: Complemental strand, 27266273 - 27266211
Alignment:
Q  403 ttttagttttgtatttgatttgatttatttattgtgaaatttagcactcaccaagtgtttgag 465  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27266273 ttttatttttgtatttgatttgatttatttattgtgaaatttaacactcaccaagtgtttgag 27266211  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 55876870 - 55877012
Alignment:
Q  21 ctcttttcctcttccacaaattctcaccc-aaaaaccctaaccacctccctcatcctccatgaactcactctaccccaccctaac-aacatcctcgacat 118  Q
    |||| ||||||||||||||||| |||||| |||||| | |||  ||||||||||||||| | ||||| |||||   ||||||||| |||| |||||||||    
T  55876870 ctctgttcctcttccacaaattatcaccccaaaaactccaactgcctccctcatcctccctaaactccctctatatcaccctaactaacaccctcgacat 55876969  T
Q  119 ccattatctcctccaacgtcctacacgccgcagctcaaaaccc 161  Q
    ||| | |||||| || ||||| || ||||||||||||||||||    
T  55876970 ccactctctcctgcaccgtcccactcgccgcagctcaaaaccc 55877012  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32440475 - 32440425
Alignment:
Q  1 cgtcgctttctctcctccctctcttttcctcttccacaaattctcacccaa 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32440475 cgtcgctttctctcctccctctcttttcctcttccacaaattctcacccaa 32440425  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11394246 - 11394292
Alignment:
Q  1 cgtcgctttctctcctccctctcttttcctcttccacaaattctcac 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11394246 cgtcgctttctctcctccctctcttttcctcttccacaaattctcac 11394292  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46233789 - 46233745
Alignment:
Q  1 cgtcgctttctctcctccctctcttttcctcttccacaaattctc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46233789 cgtcgctttctctcctccctctcttttcctcttccacaaattctc 46233745  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9208798 - 9208844
Alignment:
Q  1 cgtcgctttctctcctccctctcttttcctcttccacaaattctcac 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9208798 cgtcgctttctctcctccctctcttttcctcttccacaaattctcac 9208844  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 34025669 - 34025712
Alignment:
Q  430 tttattgtgaaatttagcactcaccaagtgtttgagaaaatgtc 473  Q
    |||||||||||||| | |||||||||||||||||| ||||||||    
T  34025669 tttattgtgaaattgaacactcaccaagtgtttgacaaaatgtc 34025712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 21592475 - 21592595
Alignment:
Q  3 tcgctttctctcctccctctcttttcctcttccacaaattc-tcacccaa-aaaccctaaccacctccctcatcctccatgaactcactctaccccaccc 100  Q
    ||||| ||||| |||||||||| | ||| ||||||||  || |||||| | ||||||||||| |||| |||||||||| ||||||| ||||  || | ||    
T  21592475 tcgctatctcttctccctctctctcccttttccacaatctcctcaccccacaaaccctaacctcctctctcatcctccctgaactccctctctcctatcc 21592574  T
Q  101 taacaacatcctcgacatcca 121  Q
    |||||||| | || |||||||    
T  21592575 taacaacaccatcaacatcca 21592595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 21596592 - 21596712
Alignment:
Q  3 tcgctttctctcctccctctcttttcctcttccacaaattc-tcacccaa-aaaccctaaccacctccctcatcctccatgaactcactctaccccaccc 100  Q
    ||||| ||||| |||||||||| | ||| ||||||||  || |||||| | ||||||||||| |||| |||||||||| ||||||| ||||  || | ||    
T  21596592 tcgctatctcttctccctctctctcccttttccacaatctcctcaccccacaaaccctaacctcctctctcatcctccctgaactccctctctcctatcc 21596691  T
Q  101 taacaacatcctcgacatcca 121  Q
    |||||||| | || |||||||    
T  21596692 taacaacaccatcaacatcca 21596712  T

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