View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18364_low_9 (Length: 504)

Name: NF18364_low_9
Description: NF18364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18364_low_9
NF18364_low_9
[»] chr7 (12 HSPs)
chr7 (64-494)||(4647063-4647495)
chr7 (361-495)||(17245446-17245580)
chr7 (115-173)||(4630780-4630838)
chr7 (19-63)||(4647476-4647520)
chr7 (141-181)||(4846225-4846265)
chr7 (139-181)||(4636708-4636750)
chr7 (139-175)||(4661649-4661685)
chr7 (139-175)||(4666786-4666822)
chr7 (115-175)||(4672527-4672587)
chr7 (130-171)||(4653375-4653416)
chr7 (139-175)||(4643522-4643558)
chr7 (139-171)||(4697398-4697430)
[»] scaffold0252 (1 HSPs)
scaffold0252 (275-491)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (275-493)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (307-491)||(8562975-8563159)
chr3 (307-493)||(6009013-6009199)
chr3 (344-493)||(17783823-17783976)
chr3 (344-493)||(19085342-19085495)
chr3 (344-493)||(19092450-19092603)
[»] chr8 (2 HSPs)
chr8 (305-493)||(15993397-15993585)
chr8 (307-493)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (307-493)||(22289352-22289538)
chr5 (305-490)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (344-473)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 64 - 494
Target Start/End: Complemental strand, 4647495 - 4647063
Alignment:
Q  64 atgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctccaggaggaaggaatcaaattgaaagagttaatctttca 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4647495 atgtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttca 4647396  T
Q  164 atcaagcttcaatgattattccaaaattaatatcatgcgcggaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaa 263  Q
    |||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647395 atcaagcttcaacgattattccaaaattgatatcatgcgggaaggatatgtccgtctggagaaagactcattgccacaatttaaagcgcgatattgacaa 4647296  T
Q  264 ttgttgcaaagaaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaa 363  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| ||    
T  4647295 ttgttgcaaagaaatgcaagacacgcggctgcaagctactggtgaggaccaaactcgcatgtttgagctaaggaaacgcttgcaacggctgatgtcctaa 4647196  T
Q  364 gacgatgcc--tattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaa 461  Q
    |||||||||  ||||||| |||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  4647195 gacgatgcctatattggcgtcaacgtgctaaagcacacttgtacaaggatggtgatagaaatacaaagttttttcatgcatcggcaacagctcggaaaaa 4647096  T
Q  462 ggtaaaccgtataacctctcttgatgatgatgt 494  Q
    | |||||||||||||||||||||||||||||||    
T  4647095 gttaaaccgtataacctctcttgatgatgatgt 4647063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 361 - 495
Target Start/End: Complemental strand, 17245580 - 17245446
Alignment:
Q  361 caagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaa 460  Q
    ||||| ||||| |||||||  ||| |||| ||  |||| ||||||||||||||||||||||| || || |||||||||||||| || | |||| | ||||    
T  17245580 caagatgatgcttattggcggcaacgtgcaaagactcattggtacaaggatggcgatagaaacaccaaattttttcatgcatctgctacagctcgtaaaa 17245481  T
Q  461 aggtaaaccgtataacctctcttgatgatgatgtc 495  Q
    ||||||| || || |  |||||||| |||||||||    
T  17245480 aggtaaatcgcattatttctcttgacgatgatgtc 17245446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
Q  115 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc 173  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||||||||||||||    
T  4630838 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc 4630780  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 4647520 - 4647476
Alignment:
Q  19 gatattttggttgaacaatatgctgatgtgattgcatgggctggt 63  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  4647520 gatattttggctgaacattatgctgatgtgattgcatgggctggt 4647476  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 4846225 - 4846265
Alignment:
Q  141 aaattgaaagagttaatctttcaatcaagcttcaatgatta 181  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  4846225 aaattgaaagagttaatctttcaatcaagcttcaacgatta 4846265  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 4636750 - 4636708
Alignment:
Q  139 tcaaattgaaagagttaatctttcaatcaagcttcaatgatta 181  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  4636750 tcaaattgaaagagtttatctttcaatcaagcttcaacgatta 4636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
Q  139 tcaaattgaaagagttaatctttcaatcaagcttcaa 175  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4661685 tcaaattgaaagagttgatctttcaatcaagcttcaa 4661649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
Q  139 tcaaattgaaagagttaatctttcaatcaagcttcaa 175  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4666822 tcaaattgaaagagttaatctttcaattaagcttcaa 4666786  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
Q  115 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa 175  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||| || |||||||||    
T  4672587 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa 4672527  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
Q  130 aggaaggaatcaaattgaaagagttaatctttcaatcaagct 171  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  4653416 aggaagcactcaaattgaaagagttaatcttacaatcaagct 4653375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4643558 - 4643522
Alignment:
Q  139 tcaaattgaaagagttaatctttcaatcaagcttcaa 175  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  4643558 tcaacttgaaagagctaatctttcaatcaagcttcaa 4643522  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 4697398 - 4697430
Alignment:
Q  139 tcaaattgaaagagttaatctttcaatcaagct 171  Q
    ||||||||||||| |||||||||||||||||||    
T  4697398 tcaaattgaaagacttaatctttcaatcaagct 4697430  T

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Target: scaffold0252 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 275 - 491
Target Start/End: Original strand, 4846 - 5062
Alignment:
Q  275 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 374  Q
    ||||||||||||||||| |||| ||| || | ||||| |||| | | ||| |||| ||| ||||||   |||||||  || |||||||||||||||||||    
T  4846 aaatgcaagacacacggatgcatgcttctggggaggatcaaaatcgtatgcttgaacttcggaaacgtatgcaacgcttgttgtcccaagacgatgccta 4945  T
Q  375 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 474  Q
    ||||| |||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  4946 ttggcgtcaacgtgctaaaactcactggtacaaggatggtgatagaaatacgaagttttttcatgcctcggcaacagcctggaaaaaggtaaatcgtata 5045  T
Q  475 acctctcttgatgatga 491  Q
    || ||||||||||||||    
T  5046 acatctcttgatgatga 5062  T

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Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 275 - 493
Target Start/End: Original strand, 25101607 - 25101825
Alignment:
Q  275 aaatgcaagacacacggctgcaagctactagtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgccta 374  Q
    |||||||||||| ||| ||| | ||| || | ||||||||||   ||||| |||| |||||||||  | ||||| |  |  |||||||||||||||||||    
T  25101607 aaatgcaagacaaacgactgtatgcttctggggaggaccaaaaccgcatgcttgaccttaggaaatgcatgcaaagcttaatgtcccaagacgatgccta 25101706  T
Q  375 ttggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtata 474  Q
    ||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||| |||  |||||||||||||| |||||    
T  25101707 ttggcgtcaacgtgctaaagctcactggtataaggatggcgacagaaatacaaagttttttcatgcctcgacaacagcccggaaaaaggtaaactgtata 25101806  T
Q  475 acctctcttgatgatgatg 493  Q
    ||||| ||| |||||||||    
T  25101807 acctcccttcatgatgatg 25101825  T

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Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 307 - 491
Target Start/End: Original strand, 8562975 - 8563159
Alignment:
Q  307 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 406  Q
    ||||| |||||| ||||| |||||||| ||||||   |||||||  |||| |||||||||||||||||||||| |||| |||||||| |||||| ||| |    
T  8562975 gaggatcaaactcgcatggttgagcttcggaaacgtatgcaacgattgctatcccaagacgatgcctattggcgtcaacgtgctaaaactcactagtata 8563074  T
Q  407 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatga 491  Q
    ||||||| || ||||||||||||||||||||||| ||||||| | || |||| |||||||| || |||| ||||||||| |||||    
T  8563075 aggatggtgacagaaatacaaagttttttcatgcctcggcaacaactcggaagaaggtaaatcgcataaactctcttgacgatga 8563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 307 - 493
Target Start/End: Complemental strand, 6009199 - 6009013
Alignment:
Q  307 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 406  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  6009199 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 6009100  T
Q  407 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    || |||| ||  | ||||| ||||||||||| || |||||||  ||| | || |||||||| |||||||| ||||||||||||||||    
T  6009099 agtatggtgaccgtaataccaagttttttcacgcttcggcaacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 6009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 493
Target Start/End: Original strand, 17783823 - 17783976
Alignment:
Q  344 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 439  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  17783823 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 17783922  T
Q  440 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  17783923 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 17783976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 493
Target Start/End: Original strand, 19085342 - 19085495
Alignment:
Q  344 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 439  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19085342 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19085441  T
Q  440 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19085442 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19085495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 493
Target Start/End: Original strand, 19092450 - 19092603
Alignment:
Q  344 tgcaacggctgctgtcccaagacgatgcctatt----ggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatg 439  Q
    |||||||||||||||||||||| ||||| ||||    ||| ||||   || ||| | || ||||| |||||||||||  | |||||  ||||||||||||    
T  19092450 tgcaacggctgctgtcccaagatgatgcttattaattggcgtcaacacgcaaaaacccattggtataaggatggcgaccgtaatacctagttttttcatg 19092549  T
Q  440 catcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    | |||||||  ||| | || |||||||| |||||||||||||||||||||||||    
T  19092550 cttcggcaacggctcgaaagaaggtaaatcgtataacctctcttgatgatgatg 19092603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 493
Target Start/End: Complemental strand, 15993585 - 15993397
Alignment:
Q  305 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 404  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || |||||    
T  15993585 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggta 15993486  T
Q  405 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
     |||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  15993485 taaggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 15993397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 493
Target Start/End: Original strand, 14502697 - 14502883
Alignment:
Q  307 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 406  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  14502697 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 14502796  T
Q  407 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  14502797 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 14502883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 493
Target Start/End: Original strand, 22289352 - 22289538
Alignment:
Q  307 gaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtaca 406  Q
    |||||||||  | ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||||| |||| | || ||| | || ||||| |    
T  22289352 gaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctgctgtcccaagatgatgcttattggcgtcaacgcgcaaaaacccattggtata 22289451  T
Q  407 aggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatgatg 493  Q
    ||||||||||  | ||||| ||||||||||| || ||||| |  ||| | || |||||||| |||||||| ||||||||||||||||    
T  22289452 aggatggcgaccgtaataccaagttttttcacgcttcggctacggctcgaaagaaggtaaatcgtataacttctcttgatgatgatg 22289538  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 305 - 490
Target Start/End: Original strand, 28243619 - 28243804
Alignment:
Q  305 gtgaggaccaaacttgcatgtttgagcttaggaaacacttgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggta 404  Q
    |||||||||||  | ||||||| ||||| ||||||    |||||||||| ||||||||| | ||||| ||||||| ||||  ||| ||| |||| |||||    
T  28243619 gtgaggaccaagttcgcatgttcgagctaaggaaaagaatgcaacggctactgtcccaatatgatgcttattggcttcaacatgcaaaaactcattggta 28243718  T
Q  405 caaggatggcgatagaaatacaaagttttttcatgcatcggcaatagcttggaaaaaggtaaaccgtataacctctcttgatgatg 490  Q
     ||||||||  |  | ||||| ||||||||||| || ||||| | |||||| || |||||||| | ||||||||||||||||||||    
T  28243719 taaggatggtaaccgtaataccaagttttttcacgcttcggctacagcttgaaagaaggtaaatcttataacctctcttgatgatg 28243804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 473
Target Start/End: Original strand, 26904527 - 26904656
Alignment:
Q  344 tgcaacggctgctgtcccaagacgatgcctattggcatcaatgtgctaaagctcactggtacaaggatggcgatagaaatacaaagttttttcatgcatc 443  Q
    ||||||||||  |||||||||| |||||||||||||  ||| |||||||  |||| |||||||||||||| ||| |||||||||| || ||||||| |||    
T  26904527 tgcaacggcttttgtcccaagatgatgcctattggcgacaacgtgctaagactcattggtacaaggatggtgatcgaaatacaaaattctttcatgtatc 26904626  T
Q  444 ggcaatagcttggaaaaaggtaaaccgtat 473  Q
     ||   ||||||||| |||||||| |||||    
T  26904627 tgcttcagcttggaagaaggtaaatcgtat 26904656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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