View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18365_high_11 (Length: 378)
Name: NF18365_high_11
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Complemental strand, 32209763 - 32209411
Alignment:
| Q |
10 |
agaacctgtgagagaaccatgtccaagtgattgagaaatttggcccaagttattactataaaccaatccaattgttcctccacaaaaatatgcaatgtaa |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32209763 |
agaacttgtgagagaaccatgtccaagtgattgagaaatttggcccaagttattactataaaccaatccaattgttcctccacaaaaatatgcaatgtaa |
32209664 |
T |
|
| Q |
110 |
tatagccaaaaatcccacctacgaatcaacttcttagttgtatgctcttcaccaagcattgtaagtttctctttttccaacacactagcaaaacaaaaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32209663 |
tatagccaaaaatcccacctacgaatcaacatcttagttgtatgctcttcgccaagcattgtaagtttctctttttccaatacactagcaaaacaaaaac |
32209564 |
T |
|
| Q |
210 |
tcttctctatcatcatgctttgtacacttccactattcattgcatcattatcctccatactaattagttctttgtgaagctcatgttcatcattattgtc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32209563 |
tcttctctatcatcatgctttgtacacttccactattcattgcatcattatcctccatactaattagttctttgtgaagctcatgttcatcattattgtc |
32209464 |
T |
|
| Q |
310 |
aatacgagcgaaacttgactcatataaagaaaagcttgcagggagggtgaaac |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32209463 |
aatacgagcgaaacttgactcatataaagaaaagcttgtagggagggtgaaac |
32209411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University