View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_high_12 (Length: 353)
Name: NF18365_high_12
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 8285023 - 8284677
Alignment:
| Q |
1 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccatttt |
100 |
Q |
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| T |
8285023 |
ccacttttacttccatagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccatttt |
8284924 |
T |
|
| Q |
101 |
cacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctccacagggaaaga |
200 |
Q |
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| T |
8284923 |
cacttccatagttcatgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctgcacagggaaaga |
8284824 |
T |
|
| Q |
201 |
gaaaaatgggggtgtaggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaa |
300 |
Q |
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| T |
8284823 |
gaaaaatgggggtgtaggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaa |
8284724 |
T |
|
| Q |
301 |
aacaccgccatcccatcattagcattagagtatccaatattcttcga |
347 |
Q |
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| T |
8284723 |
aacaccaccatcccatcattagcattggagaatccgatattgttcga |
8284677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 321
Target Start/End: Complemental strand, 34694959 - 34694753
Alignment:
| Q |
118 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
214 |
Q |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
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| Q |
215 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
314 |
Q |
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| T |
34694859 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatccc |
34694760 |
T |
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| Q |
315 |
atcatta |
321 |
Q |
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||||||| |
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| T |
34694759 |
atcatta |
34694753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 34687001 - 34686910
Alignment:
| Q |
150 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
238 |
Q |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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