View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18365_high_14 (Length: 274)
Name: NF18365_high_14
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 29660728 - 29660478
Alignment:
| Q |
18 |
cataacacttctaatgaaggaagtagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaagaataaacagg |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29660728 |
cataacacttctaatgaaggaaatagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttacagaaagaataaacagg |
29660629 |
T |
|
| Q |
118 |
caagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattag--aaatccaagaagag--nnnnnnnngtataa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
29660628 |
caagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattagaaaaatccaagaagagaaaaaaaaaagtataa |
29660529 |
T |
|
| Q |
214 |
actaattctgtttatatacaataaacagacacctttgtcgtttattctgtg |
264 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29660528 |
actaattctgtttatatacaataagcagacacctttgtcgtttattctgtg |
29660478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University