View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_high_18 (Length: 244)
Name: NF18365_high_18
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 33050343 - 33050573
Alignment:
| Q |
14 |
cagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacg |
113 |
Q |
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| T |
33050343 |
cagagaccacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacg |
33050442 |
T |
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| Q |
114 |
taaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgctag |
213 |
Q |
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| T |
33050443 |
taaggaggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttccacaatgatcccatctttactctttgcaag |
33050542 |
T |
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| Q |
214 |
tttaccggacttccactctttcagtgtgaac |
244 |
Q |
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| T |
33050543 |
tttaccggacttccactctttcaatgtgaac |
33050573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 42807121 - 42807346
Alignment:
| Q |
19 |
accacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
118 |
Q |
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| T |
42807121 |
accacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
42807220 |
T |
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| Q |
119 |
aggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgctagtttac |
218 |
Q |
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| T |
42807221 |
aggaaaacacccctcatgcaattcataacatttttccaaaacacgttatccttaaccgccttttccacaatgatcccatctttactctttgcaagtttac |
42807320 |
T |
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| Q |
219 |
cggacttccactctttcagtgtgaac |
244 |
Q |
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| T |
42807321 |
cggacttccactctttcaatgtgaac |
42807346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 42764859 - 42764987
Alignment:
| Q |
113 |
gtaaggaggaaaacaccactcatgcaattcataacatttttccaaaacacgttatccttaaccaccttttccacaatgatcccatctttactctttgcta |
212 |
Q |
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| T |
42764859 |
gtaagggggaaaacacccctcatgcaaatcataacatttttccaaaa---gttatccttaaccgccttttccacaatgatcccatctttactctttgcaa |
42764955 |
T |
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| Q |
213 |
gtttaccggacttccactctttcagtgtgaac |
244 |
Q |
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| T |
42764956 |
gtttaccggacttccattctttcaatgtgaac |
42764987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 42764369 - 42764453
Alignment:
| Q |
14 |
cagagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggagg |
101 |
Q |
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| T |
42764369 |
cagagaccacacagttaagcttgtcaaagagaaaagaa---acagagttgcaaggaagaggagtcagggggaagccgtcacagggagg |
42764453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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