View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_high_22 (Length: 220)
Name: NF18365_high_22
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_22 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 15083307 - 15083099
Alignment:
| Q |
12 |
gaaagatttacaaatttaagggagaccattagattgatattagtttatagagtattttggacttgtacaagattgtgtatatgatgacaaatagatgggt |
111 |
Q |
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| T |
15083307 |
gaaagatttacaaatttaagcgagaccattagattgatattagtttatagagtattttggacttgtacaagattgtgtatatgatgacaaatagatgggt |
15083208 |
T |
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| Q |
112 |
tctacggttaaaagggaaaacaatgtcatgataatgagtaaactactggtgtaaaactttgatgttcaaatgaaacctaaatgtacgagaaatgatattt |
211 |
Q |
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| T |
15083207 |
tctacggttaaaagggaaaacaatgtcatgataatgagtaaactactagtgtgaaactttgatgttcaaatgaaacctaaatgtaagagaaatgatattt |
15083108 |
T |
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| Q |
212 |
gaacaacca |
220 |
Q |
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||||||||| |
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| T |
15083107 |
gaacaacca |
15083099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 18660573 - 18660781
Alignment:
| Q |
12 |
gaaagatttacaaatttaagggagaccattagattgatattagtttatagagtattttggacttgtacaagattgtgtatatgatgacaaatagatgggt |
111 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18660573 |
gaaagatttataaatttaagcgagaccattagattgatattagtttatagagtattttggacttgtacaagattgtgtatatgatgacaaatacatgggt |
18660672 |
T |
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| Q |
112 |
tctacggttaaaagggaaaacaatgtcatgataatgagtaaactactggtgtaaaactttgatgttcaaatgaaacctaaatgtacgagaaatgatattt |
211 |
Q |
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| T |
18660673 |
tctacggttaaaagggaaaacaatgtcatgataatgagtaaactactagtgtgaaactttgatgttcaaatgaaacctaaatgtaagagaaatgatattt |
18660772 |
T |
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| Q |
212 |
gaacaacca |
220 |
Q |
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| T |
18660773 |
gaacaacca |
18660781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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