View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_high_5 (Length: 496)
Name: NF18365_high_5
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 37137845 - 37137373
Alignment:
| Q |
11 |
acactatctatacactcatcaaattaaatgaaaagaaaagtcctaatattgttcaaaaacttaaatatatgtttgattatcataaatataaatttttaat |
110 |
Q |
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| T |
37137845 |
acactatttatacagtcatcaaattaaatgaaaagaaaagtcctaatattgttcaaaaacttaaatatatgtttgattatcataaatataaatttt---- |
37137750 |
T |
|
| Q |
111 |
tttcaatcacaatataaaaattcatcttgtatcaatcacaacatgtttacacatgcattcaattaaatcacgacattaagatatttgtaacaatatttta |
210 |
Q |
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| T |
37137749 |
---caatcacaatataaaaattcatcttgtatcgatcacaacatgtttacaccagcattcaatcaaatcacgacaccaagatatttgtaacaatatttta |
37137653 |
T |
|
| Q |
211 |
ggaattaattataaaagtgaaactataaagtgatttgattaaatgcatgtgtaaaatcaaggtatacaaattaaattcatttttatattgctgcaaaata |
310 |
Q |
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| T |
37137652 |
ggaattaattataaaagtaaaactataaagtgatttgattaaatgcatgtttaaaatcagggtatacaaattaaattcatttttatattggagcaaaata |
37137553 |
T |
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| Q |
311 |
tagtcggtgctattatatttgtcgttg-tagagacctcaaaattcttcatcatttgtatgtaattttggttgcaaaccacaatttaaaaccacgaatcac |
409 |
Q |
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||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
37137552 |
tagtcggtgctattaaatttttcgttgcaagagacctcaaaattcttcatcatttgtatgtaattatggttgcaaaccacaatttaaagccacgaatcac |
37137453 |
T |
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| Q |
410 |
aacattttcaaaatattcacttgtaatctcttctggttttcatgattattgaatattcacaaagaattgatgatgatgtc |
489 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37137452 |
aacattttcaaaatattcacttgtaatctcttctagttttcatgattattgaatattcacaaagaattgatgataatgtc |
37137373 |
T |
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