View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_high_8 (Length: 401)
Name: NF18365_high_8
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 6156807 - 6157174
Alignment:
| Q |
19 |
acaacaaagttcagtcataaacaaagttgaagtagctctatagtctaatttaaactaaatcacaagaatttccattgaagatgaaagtggacaaaagaat |
118 |
Q |
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| T |
6156807 |
acaacaaagttcagtcataaacaaagttcaagcagctctatagtccaatttaaagtaaatcacaagaatttccattgaagatgaaagtggacaaaagaat |
6156906 |
T |
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| Q |
119 |
ttaaactatgcagttacactatctttattatgcatgtaaattagtaggagaagaacaatgtatcaacataaaacatatgatgtataggtagagttnnnnn |
218 |
Q |
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| T |
6156907 |
ttaaactatgcagttacactatctttattatgcatgtaaattagtgggagaagaacaatgtatcaacagaaaacatgtgatgtataggtagagttaaaaa |
6157006 |
T |
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| Q |
219 |
nnntacgagactaagataaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaaccttcagctgc--atcataacta |
316 |
Q |
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| T |
6157007 |
aaatacgagactaagataaatgaacataggtgtttaaacactagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatatcataacta |
6157106 |
T |
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| Q |
317 |
aactattaagtggtggcatgagagaaataaataaac-aagcaaaagattaccaaaaagatgatcttca |
383 |
Q |
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| T |
6157107 |
tactattaagtggtggcatgagagtaataaataaacaaagcaaaagattaccaaaaagatgatcttca |
6157174 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 54033134 - 54033190
Alignment:
| Q |
259 |
ctagataaatttgttatcataaaacaaagatgaaaaaccttcagctgcatcataacta |
316 |
Q |
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| T |
54033134 |
ctagataaatttattgtcataaa-caaagatgaaaagccttcagctgtatcataacta |
54033190 |
T |
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