View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18365_low_1 (Length: 820)
Name: NF18365_low_1
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 19 - 799
Target Start/End: Complemental strand, 41876122 - 41875343
Alignment:
| Q |
19 |
accttggccac-gcaagatcaactaaaaacatgtcaaagagcaatgcttagcaaaagcaagtcacagttccctataacatattttagacatcaagtttta |
117 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876122 |
accttggccactgcaagatcaactaaa--catgtcaaagagcaatgcttagcaaaagcaagtcacagttccctataacatattttagacatcaagtttta |
41876025 |
T |
|
| Q |
118 |
caagtttaataaataaaagtaacatgttgttgtagatcttattattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaatta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41876024 |
gaagtttaataaataaaagtaacatgttgttgtagatcttattattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaatta |
41875925 |
T |
|
| Q |
218 |
ggttatagcttacattaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctact |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875924 |
ggttatagcttatattaaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctact |
41875825 |
T |
|
| Q |
318 |
aacacaaaattaaattgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattaga |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41875824 |
aacacaaaattaagttgtttatctaaataagtcttggatgatctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattaga |
41875725 |
T |
|
| Q |
418 |
agaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcatac |
517 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41875724 |
agaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaacttcatctcttgaccttatgttggcctcagaaaagttaaccttaccatcatac |
41875625 |
T |
|
| Q |
518 |
ctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcat |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41875624 |
ctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcat |
41875525 |
T |
|
| Q |
618 |
gatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtaattattgcataaaacaaacctgc |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41875524 |
gatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtatttattgcataaaacaaacctgc |
41875425 |
T |
|
| Q |
718 |
tgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
799 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41875424 |
tgtgtgttataacacctttagaagcatcttcatctgtgagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
41875343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
| Q |
234 |
aaataatttgaccttattttatcttttagtacagaaataacttatttataag |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||| |||| |||||| |
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|
| T |
5269519 |
aaataatttgactttattttatcttttattaaagaaataatttatatataag |
5269468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 376 - 802
Target Start/End: Original strand, 40868457 - 40868891
Alignment:
| Q |
376 |
tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctctt |
475 |
Q |
| |
|
||||||||| ||| | |||||||||||||| ||||||||| ||| | ||||||| |||||||| |||||||| | || | |||||||| ||| |||||| |
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|
| T |
40868457 |
tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctctt |
40868556 |
T |
|
| Q |
476 |
gaccgtatgttggcctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcag |
575 |
Q |
| |
|
|| || || ||||||||||| || |||||| |||| |||||| ||| |||||||||| |||||| ||||| ||||||| ||| |||||| |||||||| |
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|
| T |
40868557 |
gatcgcatattggcctcagaccagataacctgaccaccataccgcttcacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcag |
40868656 |
T |
|
| Q |
576 |
ggattccccttagttttgctgccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaag-agaataaattaactgaatcagat |
674 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||| | |||||| | || ||| |||| |
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|
| T |
40868657 |
ggatcccccgtagttttgctgccagagccaatgcagcagcatggtttccactgatttcagagaacaacgtcagaagaacaataaaattacaaaataagat |
40868756 |
T |
|
| Q |
675 |
ttgaaaaaataa----cttatgtaat---tattgcataaaacaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaaca |
767 |
Q |
| |
|
|||||||||||| || || ||| || |||| | |||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||| |
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|
| T |
40868757 |
ttgaaaaaataatcagtttctggaattactactgcacataacaaacctgctgtgtgttataacccctttagacgcatcttcatcattgagagagaaaaca |
40868856 |
T |
|
| Q |
768 |
gcattgcaggcacctctaaatttaaaagctccact |
802 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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| T |
40868857 |
gcattgcatgcacctctaaatttaaaagctccact |
40868891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
| Q |
237 |
taatttgaccttattttatcttttagtacagaaataacttat |
278 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||| |
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|
| T |
31705070 |
taatttgacatgattttatcttttagtacagaaatagcttat |
31705029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
| Q |
236 |
ataatttgaccttattttatcttttagtacagaaataacttatttataag |
285 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
41620374 |
ataatttgactttattttatcttttgttacaaaaataacttatatataag |
41620423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 390 - 631
Target Start/End: Original strand, 24817944 - 24818185
Alignment:
| Q |
390 |
tctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggc |
489 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| | ||||||| |||||||| | || | | ||| |||||| ||||||||| | || || | |
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| T |
24817944 |
tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttgcctcactttgttcataacttcttctcttgactgcatattatc |
24818043 |
T |
|
| Q |
490 |
ctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagt |
589 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||| ||| |||| ||||||| ||| || |||| ||| |||| |||||||||| ||||||| |
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|
| T |
24818044 |
ctcagccaaattaacgtttccatcgtacctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatc |
24818143 |
T |
|
| Q |
590 |
tttgctgccaaagccaatgcagcagcatgatttccactgatt |
631 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||| |
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|
| T |
24818144 |
tttgctgccaaagataatgcagcagcatggttcccactgatt |
24818185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 706 - 799
Target Start/End: Original strand, 24818262 - 24818355
Alignment:
| Q |
706 |
aaacaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
799 |
Q |
| |
|
||||| ||||||||||||| | || ||||||||||| |||||||| || ||||||| |||||| ||||| ||||| ||||||||||||||||| |
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|
| T |
24818262 |
aaacacacctgctgtgtgtagttactcctttagaagcctcttcatcggtcagagagagaacagcgttgcatgcacccctaaatttaaaagctcc |
24818355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
| Q |
236 |
ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa |
288 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
36641862 |
ataatttgactttattttatcttttgttatagaaataacttatatataagtaa |
36641810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
| Q |
296 |
tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc |
350 |
Q |
| |
|
|||||||||||||| || ||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
24817795 |
tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc |
24817849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
| Q |
234 |
aaataatttgaccttattttatcttttagtacagaaataacttat |
278 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||| |
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|
| T |
3423849 |
aaataatttgactttattttatcttttggtacaaaaataacttat |
3423893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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