View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_low_10 (Length: 380)
Name: NF18365_low_10
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 32773917 - 32773563
Alignment:
| Q |
11 |
cagagaggtcctcagaattgacacgtacgtattcccaaactcctggattaggcctaattgcaaaggctacatatggtggatcaacaacagcttcctgcaa |
110 |
Q |
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| T |
32773917 |
cagagaggtcctcagaattgacacgtacgtattcccaaactcctggattaggcctaattgcaaaggctacatatggtggatcaacaacagcttcctgcaa |
32773818 |
T |
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| Q |
111 |
gttcatatgtactacattataattcaaagcctaaatgttttcgagccactcttttagaattaattataaatgttttccaaaatgctgaggatttgagtga |
210 |
Q |
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| T |
32773817 |
gttcatatgtactacattataattcaaagcctaaatgttttcgagccactcttttagaattaattataaatgttttccaaaatgctgaggatttgagtga |
32773718 |
T |
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| Q |
211 |
ttaaacatattagaccaaatataaaaagaacctgtgtagagctcaatataaagccaagatttccctccaaaacataatgtctttcatttatatcatctat |
310 |
Q |
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| T |
32773717 |
ttaaacatattagaccaaatataaaaagaacctgtgtagagctcaatataaagccaagatttccctccaaaatataatttctttcatttatatcatctat |
32773618 |
T |
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| Q |
311 |
agttcgttccacttcttccattaattcatcaagtttcatgattcttctccctttt |
365 |
Q |
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| T |
32773617 |
agttcgttccacttcttccattaattcatgaagtttcatgattcttctccctttt |
32773563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 29121423 - 29121494
Alignment:
| Q |
40 |
tattcccaaactcctggattaggcctaattgcaaaggctacatatggtggatcaacaacagcttcctgcaag |
111 |
Q |
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| T |
29121423 |
tattcccaaactccagggtctggccttactgcaaaggcaacatatggtggatcaacaatagcttcctgcaag |
29121494 |
T |
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