View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_low_15 (Length: 250)
Name: NF18365_low_15
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42807615 - 42807854
Alignment:
| Q |
1 |
atcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807615 |
atcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttttg |
42807714 |
T |
|
| Q |
101 |
cttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttcttcaagtattggtccaaccgtcgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42807715 |
cttatgttagacgcgtcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttcaagtattggtccaaccgtcgg |
42807814 |
T |
|
| Q |
201 |
tcattatggtgtattctaatttcttcttaacaaccctatg |
240 |
Q |
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| T |
42807815 |
tcattatggtgtattctaatttcttcttaacgaccctatg |
42807854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42765252 - 42765494
Alignment:
| Q |
1 |
atcaactttgta--atttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttt |
98 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42765252 |
atcaactttgtataattttctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttt |
42765351 |
T |
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| Q |
99 |
tgcttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttctt-caagtattggtccaaccgt |
197 |
Q |
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| T |
42765352 |
tgcttatgttagatgcgtcaatagatttcctaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttcttccaagtattggtccaaccgt |
42765451 |
T |
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| Q |
198 |
cggtcattatggtgtattctaatttcttcttaacaaccctatg |
240 |
Q |
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| T |
42765452 |
cggtcattatggtgtattttaatttcttcttaacaaccctatg |
42765494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33050852 - 33051091
Alignment:
| Q |
1 |
atcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaacctttacaacaatatcatcttaaaaacattgtcggcagtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33050852 |
atcaactttgtaatttgctgcattgtccataaaaattgggacaagttcttcaacaaccttaacaacaatatcatcttaaaaacattgtcggcagtttttg |
33050951 |
T |
|
| Q |
101 |
cttatgttagacgcgtcaatagatttcttaaaaatggctcgctcgagagtattcaccaaaaagttcagcatagttcttcaagtattggtccaaccgtcgg |
200 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
33050952 |
cttatgatagacgcatcaatagatttcttaaaaatggctcgcttgagagtattcaccaaaaagttcagtatagttctttaagtattggtccaaccgtcgg |
33051051 |
T |
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| Q |
201 |
tcattatggtgtattctaatttcttcttaacaaccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33051052 |
tcattatggtgtattctaatttcttcttaacaaccctatg |
33051091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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