View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18365_low_19 (Length: 239)
Name: NF18365_low_19
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_19 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 11157121 - 11156897
Alignment:
| Q |
15 |
caaaaaaggcataagaagttgaaatgatgaaaataattcagtgacatgaagaatattaagaaccctaataaagcatatgaaaaaaccctaataaatatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157121 |
caaaaaaggcataagaagttgaaatgatgaaaataattcagtgacatgaagagtattaagaaccctaataaagcatatgaaaaaaccctaataaatatga |
11157022 |
T |
|
| Q |
115 |
gaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157021 |
gaagagaagaagaagtttggaacctggattgaggaggagttgttggaggcaaaggggatcacatcccatggagattggttaagttgacaaacatgggttt |
11156922 |
T |
|
| Q |
215 |
gaaaaatttcaactgcaaatgaacc |
239 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
11156921 |
gaaaaatttcaactggaaatgaacc |
11156897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 11164081 - 11163889
Alignment:
| Q |
16 |
aaaaaaggcataagaagttgaaatgatgaaaataattcagtgacatgaagaatattaagaaccctaataaagcatatgaaaaaaccctaataaatatgag |
115 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
11164081 |
aaaaagggaataagaagctgaaaagatgaaaataattcagtgatgtaaagaatattaagaaccctaataaagcatatgaaaaaaccctaatagatataag |
11163982 |
T |
|
| Q |
116 |
aagagaagaagaagtttggaacctgg---attgaggaggagttgttggaggcaaaggggatcacatcccatggagattggttaagttgacaaa |
205 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11163981 |
aagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaaggggatcacatcccatggagattggttaagctgacaaa |
11163889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 11176868 - 11176753
Alignment:
| Q |
16 |
aaaaaaggcataagaagttgaaatgatgaaaataattcagtgacatgaagaatattaagaaccctaataaagcatatgaa---aaaaccctaataaatat |
112 |
Q |
| |
|
||||| || |||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||||||| || ||||||| |||||||||||| || | |
|
|
| T |
11176868 |
aaaaagggaataagaagttaaaaaaatgaaaataatttagtgatatgaagaatatgaagaaccctaatgaatgatatgaaaaaaaaaccctaatagatct |
11176769 |
T |
|
| Q |
113 |
gagaagagaagaagaa |
128 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
11176768 |
gagaagagaataagaa |
11176753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 11176746 - 11176677
Alignment:
| Q |
170 |
ggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactgcaaatgaacc |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || | ||||||| |||||| || ||||||||| |
|
|
| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaacc |
11176677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 4703888 - 4703942
Alignment:
| Q |
165 |
aaaggggatcacatcccatggagattggttaagttgacaaacatgggtttgaaaa |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaa |
4703942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University