View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_low_20 (Length: 239)
Name: NF18365_low_20
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_20 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 27874556 - 27874360
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27874556 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
27874457 |
T |
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| Q |
143 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27874456 |
atttttcggtgcactattgtcaacaaaataggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
27874360 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 42265654 - 42265850
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42265654 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
42265753 |
T |
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| Q |
143 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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| T |
42265754 |
atttttcggtgcactattgtcaacaaaataggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
42265850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 42270373 - 42270569
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270373 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
42270472 |
T |
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| Q |
143 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42270473 |
atttttcggtgcactattgtcaacaaaataggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
42270569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 9444659 - 9444462
Alignment:
| Q |
42 |
ctgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagt |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9444659 |
ctgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgtctttgaaagt |
9444560 |
T |
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| Q |
142 |
aatttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9444559 |
aatttttcggtgcactattgtcaacaaaataggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
9444462 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 9439938 - 9439742
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9439938 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacagcatgcatggcagtaaaatcatgtggacaatatgactttgtctttgaaagta |
9439839 |
T |
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| Q |
143 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9439838 |
atttttcggtgcactattgtcaacaaaataggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
9439742 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 54545615 - 54545811
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgttacaacatgcatggcagtaaaaacatgtggacaatatgactttgtctttgaaagta |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54545615 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattcttacagcatgcatggcagtaaaaacatgtggataatatgactttgtctttgaaagta |
54545714 |
T |
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| Q |
143 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54545715 |
atttttcggtgcactattgtcaacaaaattggttggttgttgttctaaagtccatggtgccttaaatgcaagttgttgaggcaatggattttgctcc |
54545811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 34614320 - 34614276
Alignment:
| Q |
43 |
tgtgaacatgtgtgaacaagtaaagccacattttgttgaattgtt |
87 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
34614320 |
tgtgaacatgtgtgaattcgtaaagccaccttttgttgaattgtt |
34614276 |
T |
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