View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_low_3 (Length: 558)
Name: NF18365_low_3
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 540
Target Start/End: Complemental strand, 741953 - 741430
Alignment:
| Q |
10 |
catcatcatcattattttaatctttttcttatagnnnnnnntgtaacttataactaannnnnnnattgttgttgtgtaggtgtatggtgctagaccaatt |
109 |
Q |
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| T |
741953 |
catcatcatcattattttaatctttttcttatagaaaaaaatgtaacttataactaatttttttattgttgttgtgtaggtgtatggtgctagaccaatt |
741854 |
T |
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| Q |
110 |
agaaggtggcttgagaaaaaggtggcgacagtgctgtctatgctta--caaggaaagtaattgatgagaatacaacggtttacattgatgttggtccaaa |
207 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
741853 |
agaaggtggcttgagaaaaaggtggtgacagtgctgtctatgcttatacaaggaaagtaattgatgagaatacaacggtttacattgatgttggtccaaa |
741754 |
T |
|
| Q |
208 |
tgacagttatttggtataccgtgtagaaaataatggagggcatgttattaatgctgaaacttgca---------------aagtaattatctaatgattc |
292 |
Q |
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| T |
741753 |
tgacagttatttggtataccgtgtagaaaataatggagggcatgttattaatgctgaaacttgcaaagtcgcgaggctgcaagtaattatctaatgattc |
741654 |
T |
|
| Q |
293 |
atccttcttttctttgaattttggctaaatccttccaatatgatctactcgaatctcgaaggatcgatcgcatttcttttttaggaaggagctatgctac |
392 |
Q |
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| T |
741653 |
atccttcttttctttgaattttggctaaatccttccaatatgatctactcgaatcccta--catctatcgcatttcttttttaggaaggagctatgctac |
741556 |
T |
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| Q |
393 |
gtgtatattttttagtatacatttctgatagctagaaatgtaggactaggacccgacctatctcgaagagcaatctaggactcgactcaggtccttcaaa |
492 |
Q |
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| T |
741555 |
gtgtatatttttgagtatacatttctgatagctaga----------------------tatctcgaagagcaatctaggactcgactcaggtccttaaaa |
741478 |
T |
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| Q |
493 |
tttaaactaatttcatatataccgtatataaagaaaataagctgcttt |
540 |
Q |
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| T |
741477 |
tttaaactaatttcatatataccgtatataaagaaaataagctgcttt |
741430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 78 - 270
Target Start/End: Complemental strand, 42449031 - 42448836
Alignment:
| Q |
78 |
ttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtcta---tgcttacaaggaaagtaattgatga |
174 |
Q |
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| T |
42449031 |
ttgttttgtaggtgtatggtgctagaccaattagaagctggcttgagaaaaaggtggtgacagtgttgtctaggatgcttacaaggaaagtaattggtga |
42448932 |
T |
|
| Q |
175 |
gaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaataatggagggcatgttattaatgctgaaacttg |
270 |
Q |
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| T |
42448931 |
gaatacaacggtttacatcgatgttggtccaaatgacagttatttggtataccgtgttgaaaataatggagggcatgttattaatgctgaaacttg |
42448836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 739756 - 739589
Alignment:
| Q |
75 |
ttgttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtct---atgcttacaaggaaagtaattga |
171 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||| ||||||| ||||||| |||| ||| |||||| |
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| T |
739756 |
ttgttgtattgtaggtgtatggtgctagatcaattagaaggtggcttgagaagaaggtagtgacagagctgtctaggatgcttataagggaagaaattga |
739657 |
T |
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| Q |
172 |
tgagaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaata |
239 |
Q |
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| T |
739656 |
tgaaaatacaacagtttacatcgatgctgatcctaatggaagtggtttggtacaccgtgcagaaaata |
739589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 42448111 - 42448039
Alignment:
| Q |
275 |
gtaattatctaatgattcatccttcttttctttgaattttggctaaatccttccaatatgatctactcgaatc |
347 |
Q |
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| T |
42448111 |
gtaattatctaacgatccatccttcttttctttgaattttggctaaatccttccaatatgatcttttcgaatc |
42448039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 42447814 - 42447746
Alignment:
| Q |
362 |
gcatttcttttttaggaaggagctatgctacgtgtatattttttagtatacatttctgatagctagaaa |
430 |
Q |
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| T |
42447814 |
gcatttcttcttttggaaggagccatgctatgtgtgtatttttgagtatacatttctgatagctagaaa |
42447746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 10047065 - 10047234
Alignment:
| Q |
78 |
ttgttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtctatg---cttacaaggaaagtaattgatga |
174 |
Q |
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|||||||||||||||| ||||||||||||||| | |||||||||||| || |||| ||||| ||| |||||| |||| |||| ||| ||||||||| |
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| T |
10047065 |
ttgttgtgtaggtgtacggtgctagaccaatttg---gtggcttgagaagaatgtggtgacagagctatctatgatgcttataagggaagaaattgatga |
10047161 |
T |
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| Q |
175 |
gaatacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaataatggaggg |
247 |
Q |
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||||||||| |||| |||||||| |||||| || | ||| |||||||||||||||| ||||| ||||||||| |
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| T |
10047162 |
gaatacaactgtttgcattgatgctggtcctaagggaagtgatttggtataccgtgtcgaaaagaatggaggg |
10047234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 38709028 - 38709195
Alignment:
| Q |
81 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtctatgct---tacaaggaaagtaattgatgagaa |
177 |
Q |
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| T |
38709028 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaagaatgtggtgagtgagctggctatgatgtatataaaggaaaaaattgatgagaa |
38709127 |
T |
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| Q |
178 |
tacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaataatggag |
245 |
Q |
| |
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| T |
38709128 |
cacaactgtatacattgatgttggtcctaagggaagtgacttgtcataccgtgtggaaaagaatggag |
38709195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 45468757 - 45468926
Alignment:
| Q |
81 |
ttgtgtaggtgtatggtgctagaccaattagaaggtggcttgagaaaaaggtggcgacagtgctgtcta---tgcttacaaggaaagtaattgatgagaa |
177 |
Q |
| |
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| T |
45468757 |
ttgtataggtgtatggagctagaccaatcagaagatggctagagaagaaggtggtgacagaactctctaggatgctcataagagaagaaattgatgagaa |
45468856 |
T |
|
| Q |
178 |
tacaacggtttacattgatgttggtccaaatgacagttatttggtataccgtgtagaaaataatggaggg |
247 |
Q |
| |
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||||||||||||||| |||| |||||| || | || |||||| ||||||||||||||| ||||||||| |
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| T |
45468857 |
tacaacggtttacatagatgctggtcctaagggaagcgatttggcataccgtgtagaaaagaatggaggg |
45468926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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