View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18365_low_6 (Length: 482)
Name: NF18365_low_6
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18365_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 742412 - 741930
Alignment:
| Q |
1 |
tgagaagaaggcgaaacattgtgctacttttcgcagatgtggagatggcacatatttctgtaatcaacaaactactttatatcttagaggatgggagttt |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742412 |
tgagaagaaggccaaacattgtgctacttttcgaagaagtggagaaagcacatatttctgtaatcaacaaactactttatatcttagaggatgggagttt |
742313 |
T |
|
| Q |
101 |
aactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742312 |
aactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaa |
742213 |
T |
|
| Q |
201 |
tgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgtt-ggccagctaaccaaagttgtagtattcaatc |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
742212 |
tgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgttgggccagctaaccaaagttgtagtattcaatc |
742113 |
T |
|
| Q |
300 |
ctctttctcaccagcaattgaggaaggttgcatggttgcaaatcaaggatgtagctaatcgtttttgtaggaaaggaactacattggtggaagttacaga |
399 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742112 |
ctctttctcaccagcaattgaggaaggttgcaaggttgcaaatcaaggatgtagctaatcgtttttgtaggaaaggaactacattggtggaagttacaga |
742013 |
T |
|
| Q |
400 |
tggagcagtggattatatacttgctgagagctatgatcctgtaagtgttattattatagcatcatcatcattattttaatctt |
482 |
Q |
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| T |
742012 |
tggagcagtggattatatacttgctgagagctatgatcctgtaagtgttattattatagcatcatcatcattattttaatctt |
741930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 42449542 - 42449088
Alignment:
| Q |
1 |
tgagaagaaggcgaaacattgtgctacttttcgcagatgtggagatggcacatatttctgtaatcaacaaactactttatatcttagaggatgggagttt |
100 |
Q |
| |
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|||||||||||| ||||| |||||||||||| | ||| ||||||| ||||||| ||| |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
42449542 |
tgagaagaaggccaaacagtgtgctacttttggaagaagtggagaaagcacatacttcagtaatcaacaaattactttatatcttagaggatggaagttt |
42449443 |
T |
|
| Q |
101 |
aactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
42449442 |
aactgatggacaaggcagaactgtggattttacgaacatggtcattatcatgacctcgaaccttggtgccgatcatctcttaagtggactttcaggaaaa |
42449343 |
T |
|
| Q |
201 |
tgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgttg-gccagctaaccaaagttgtagtattcaatc |
299 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||| | ||| |||||| | ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
42449342 |
tgtaccatccaagtagctcacgatcgagtaatgcaggaagtcagtgagcatttcctgctagaattgttgaatcagctgaccaaagttgtagtattcaatc |
42449243 |
T |
|
| Q |
300 |
ctctttctcaccagcaattgaggaaggttgcatggttgcaaatcaaggatgtagctaatcgtttttgtaggaaaggaactacattggtggaagttacaga |
399 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||| |||||||||| | | ||| ||||||||| |
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| T |
42449242 |
ctctttcttaccagcaattgaggaaggttgcaaggttgcaaatcaaggatgtaggtaatcgtcttggtaagaaaggaact---tcgttggcagttacaga |
42449146 |
T |
|
| Q |
400 |
tggagcagtggattatatacttgctgagagctatgatcctgtaagtgttattattata |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
42449145 |
tggagcagtggattatatacttgctgagagctatgatcctgtaagtgttactattata |
42449088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 91 - 361
Target Start/End: Complemental strand, 740234 - 739958
Alignment:
| Q |
91 |
atgggagtttaactgatggacaaggcagaactgtggattttacga-----acacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagt |
185 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| |||||||| | || ||||||| |||| |
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| T |
740234 |
atgggaggctaactgatggacaaggcagaactgtggattttaggataggaacacagtcattatcatgacctcaaaccttggttccgagcatctcctaagt |
740135 |
T |
|
| Q |
186 |
ggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgttg-gccagctaaccaaag |
284 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| | |||||||| || |||||||||| | ||| | ||| |
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| T |
740134 |
ggactttcaggaaaatgtaccatggaagttgctcgcgataaagtaatgcaggaagtgagaaatcatttcaggccagaattgttgaatcggctggacgaag |
740035 |
T |
|
| Q |
285 |
ttgtagtattcaatcctctttctcaccagcaattgaggaaggttgcatggttgcaaatcaaggatgtagctaatcgt |
361 |
Q |
| |
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|||| |||||| | |||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
740034 |
ttgttgtattcgaccctctttctcacaagcaattgaggaaggttgcaaggatgcaaatgaaggatgtagctaatcgt |
739958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 99 - 446
Target Start/End: Original strand, 10046657 - 10047002
Alignment:
| Q |
99 |
ttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaa |
198 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| |||||| ||| ||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||| |
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| T |
10046657 |
ttaactgatggccaaggaagaactgtggattttaggaacacagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaa |
10046756 |
T |
|
| Q |
199 |
aatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgttggcca-gctaaccaaagttgtagtattcaa |
297 |
Q |
| |
|
| ||||||||||||||||||| ||| |||||||||| |||||||| | |||||| || |||||||||| | |||| | ||||||| |||||| | |
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| T |
10046757 |
attgtaccatgcaagttgctcgcgaccgagtaatgctggaagtaaaaaagcatttccggccagaattgttgaataggctagacgaagttgttgtattcga |
10046856 |
T |
|
| Q |
298 |
tcctctttctcaccagcaattgaggaaggttgcatggttgcaaatcaaggatgtagctaatcgtttttgtaggaaaggaactacattggtggaagttaca |
397 |
Q |
| |
|
||| || |||||| |||||||||||||||||||| |||||||||| |||||||| |||| |||| || || ||||| | ||| ||| |||||| |
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|
| T |
10046857 |
tccactatctcacgagcaattgaggaaggttgcaaggttgcaaatgaaggatgttgctagtcgtcttgccgagagaggaattgcat---tggcagttact |
10046953 |
T |
|
| Q |
398 |
gatggagcagtggattatatacttgctgagagctatgatcctgtaagtg |
446 |
Q |
| |
|
||| |||| | ||||||||||||||||| ||||||||||| ||||||| |
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| T |
10046954 |
gatccagcactagattatatacttgctgaaagctatgatcccgtaagtg |
10047002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 38708308 - 38708406
Alignment:
| Q |
145 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaa |
243 |
Q |
| |
|
||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38708308 |
ttatcatgacctcaaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagtaa |
38708406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 38708576 - 38708617
Alignment:
| Q |
410 |
gattatatacttgctgagagctatgatcctgtaagtgttatt |
451 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38708576 |
gattatatacttgctgaaagctatgatcctgtaagtgttatt |
38708617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 90 - 446
Target Start/End: Original strand, 45468309 - 45468663
Alignment:
| Q |
90 |
gatgggagtttaactgatggacaaggcagaactgtggattttacgaacacggtcgttatcatgacctcgaaccttggcgctgatcatctccaaagtggac |
189 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||| ||||| || | ||||||||||| |||||||| ||||| |||||| ||||||| |
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| T |
45468309 |
gatgggaggttgactgacggacaaggcagaactgtggattttagaaacactgtgatcatcatgacctctaaccttggtgctgagcatctcttgagtggac |
45468408 |
T |
|
| Q |
190 |
tttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagtaactgatcatttctggttagaattgttg-gccagctaaccaaagttgt |
288 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||| || |||||||||| || || | ||||||| |
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|
| T |
45468409 |
tttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaagaaggcatttcaggccagaattgttgaaccgactggacgaagttgt |
45468508 |
T |
|
| Q |
289 |
agtattcaatcctctttctcaccagcaattgaggaaggttgcatggttgcaaatcaaggatgtagctaatcgtttttgtaggaaaggaactacattggtg |
388 |
Q |
| |
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||||| ||||||| || || |||||||||| ||||||||| |||||||||| |||||||| |||| |||| || | || ||||| | ||| || |
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| T |
45468509 |
tgtatttgatcctctatcacatgagcaattgagaaaggttgcaaggttgcaaatgaaggatgtggctagtcgtcttgctgagagaggaattgcat---tg |
45468605 |
T |
|
| Q |
389 |
gaagttacagatggagcagtggattatatacttgctgagagctatgatcctgtaagtg |
446 |
Q |
| |
|
| ||| ||||||| ||| | |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
45468606 |
gcagtaacagatgcagctctagattatattcttgctgagagctatgatccagtaagtg |
45468663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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