View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18365_low_9 (Length: 384)

Name: NF18365_low_9
Description: NF18365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18365_low_9
NF18365_low_9
[»] chr8 (5 HSPs)
chr8 (6-167)||(32710883-32711044)
chr8 (302-366)||(32710682-32710746)
chr8 (121-168)||(1590581-1590628)
chr8 (114-162)||(27342547-27342595)
chr8 (114-168)||(37929307-37929361)
[»] chr5 (1 HSPs)
chr5 (114-168)||(11721793-11721847)
[»] chr1 (2 HSPs)
chr1 (129-167)||(3296091-3296129)
chr1 (130-167)||(34395303-34395340)
[»] chr3 (1 HSPs)
chr3 (130-162)||(35583623-35583655)
[»] chr2 (3 HSPs)
chr2 (115-167)||(34443875-34443927)
chr2 (130-168)||(5590848-5590886)
chr2 (122-162)||(32151785-32151825)
[»] chr7 (2 HSPs)
chr7 (114-168)||(38154105-38154159)
chr7 (140-168)||(23710318-23710346)
[»] chr6 (1 HSPs)
chr6 (114-160)||(13390117-13390163)
[»] chr4 (1 HSPs)
chr4 (133-167)||(40435367-40435401)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 32711044 - 32710883
Alignment:
Q  6 aggttcaatgatattaagttttaatccatgcatacatattaacaaagaaaacttattatttcaattccttcaacnnnnnnnnnnnncttattagtatttc 105  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||             |||||||||||||     
T  32711044 aggttcaatgatattaagttttaatccatacatacatattaacaaagaaaacttattatttcaattccttaaa--aaaaaaaaaaacttattagtatttt 32710947  T
Q  106 aatggc--atccttgtactaggacaaacattttgtgttgataatatattccattttagcctctt 167  Q
    ||||||  ||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  32710946 aatggcatatccttgtattaggaaaaacattttgtgttgataatatgttccattttagcctctt 32710883  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 32710746 - 32710682
Alignment:
Q  302 ccaagtctctatgaatttaataagtttagcttagttaataaagaaattgcactttacaaaagttg 366  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32710746 ccaagtctctatgaatttaataagtttagcttagttactaaagaaattgcactttacaaaagttg 32710682  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 1590581 - 1590628
Alignment:
Q  121 ctaggacaaacattttgtgttgataatatattccattttagcctcttc 168  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||||    
T  1590581 ctaggaaagacattttgtgttgataatatattccattttagcttcttc 1590628  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 27342595 - 27342547
Alignment:
Q  114 ccttgtactaggacaaacattttgtgttgataatatattccattttagc 162  Q
    |||||| |||||| | ||||||||||||||||||||||| |||||||||    
T  27342595 ccttgtgctaggaaagacattttgtgttgataatatatttcattttagc 27342547  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 37929307 - 37929361
Alignment:
Q  114 ccttgtactaggacaaacattttgtgttgataatatattccattttagcctcttc 168  Q
    |||||| |||||| | || ||||| |||| |||||||||||||||||||||||||    
T  37929307 ccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttc 37929361  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 11721793 - 11721847
Alignment:
Q  114 ccttgtactaggacaaacattttgtgttgataatatattccattttagcctcttc 168  Q
    |||||| |||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  11721793 ccttgtgctaggaaaaacattttgatttgataatatattctattttagcctcttc 11721847  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 3296091 - 3296129
Alignment:
Q  129 aacattttgtgttgataatatattccattttagcctctt 167  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  3296091 aacattttgtgttgataatatattccattttagcttctt 3296129  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 34395340 - 34395303
Alignment:
Q  130 acattttgtgttgataatatattccattttagcctctt 167  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  34395340 acattttgtgttgataatatatttcattttagtctctt 34395303  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 35583623 - 35583655
Alignment:
Q  130 acattttgtgttgataatatattccattttagc 162  Q
    |||||||||||||||||||||||||||||||||    
T  35583623 acattttgtgttgataatatattccattttagc 35583655  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 34443875 - 34443927
Alignment:
Q  115 cttgtactaggacaaacattttgtgttgataatatattccattttagcctctt 167  Q
    ||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||    
T  34443875 cttgtgctaggaaaaacattttgatttggtaatatattccattttagcctctt 34443927  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 5590848 - 5590886
Alignment:
Q  130 acattttgtgttgataatatattccattttagcctcttc 168  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  5590848 acattttgtgttgatagtatattccattttagcttcttc 5590886  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 32151785 - 32151825
Alignment:
Q  122 taggacaaacattttgtgttgataatatattccattttagc 162  Q
    ||||| ||||||||||| ||||||||||||| |||||||||    
T  32151785 taggaaaaacattttgttttgataatatatttcattttagc 32151825  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 38154105 - 38154159
Alignment:
Q  114 ccttgtactaggacaaacattttgtgttgataatatattccattttagcctcttc 168  Q
    |||||| |||||| | || ||||| |||| |||||||||||||||||||||||||    
T  38154105 ccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttc 38154159  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 23710346 - 23710318
Alignment:
Q  140 ttgataatatattccattttagcctcttc 168  Q
    |||||||||||||||||||||||||||||    
T  23710346 ttgataatatattccattttagcctcttc 23710318  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 13390163 - 13390117
Alignment:
Q  114 ccttgtactaggacaaacattttgtgttgataatatattccatttta 160  Q
    |||||| |||||| | |||||||| ||||||||||||||||||||||    
T  13390163 ccttgtgctaggaaagacattttgagttgataatatattccatttta 13390117  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 40435367 - 40435401
Alignment:
Q  133 ttttgtgttgataatatattccattttagcctctt 167  Q
    ||||||||||||||||||||||||||||| |||||    
T  40435367 ttttgtgttgataatatattccattttagtctctt 40435401  T

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