View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18366_low_1 (Length: 263)

Name: NF18366_low_1
Description: NF18366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18366_low_1
NF18366_low_1
[»] chr6 (16 HSPs)
chr6 (1-241)||(32103147-32103391)
chr6 (70-130)||(32103379-32103439)
chr6 (24-121)||(32073725-32073822)
chr6 (101-241)||(32103110-32103251)
chr6 (19-106)||(32103306-32103392)
chr6 (133-241)||(32073766-32073875)
chr6 (59-123)||(32086203-32086267)
chr6 (1-85)||(32086214-32086298)
chr6 (1-96)||(32073840-32073935)
chr6 (136-241)||(32073700-32073806)
chr6 (66-123)||(32073652-32073709)
chr6 (66-123)||(32086033-32086090)
chr6 (59-123)||(32073829-32073893)
chr6 (134-216)||(32073652-32073735)
chr6 (134-216)||(32086033-32086116)
chr6 (138-187)||(32103379-32103428)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32103147 - 32103391
Alignment:
Q  1 catgcaagaagacgtgtatattccatgcaagaagataagtgtcattcgtgcacaaattcaagtgtttttcatgcaagaagccatgtgcattccatggaaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32103147 catgcaagaagacgtgtatattccatgcaagaagctaagtgtcattcgtgcaccaattcaagtgtttttcatgcaagaagccatgtgcattccatggaaa 32103246  T
Q  101 aagccaagtgtaattcatgcaccgagctagattttttcatgcaag----aaaccatgtgtattccattcaaaaagtcaagtgtaattcatgacgaatcca 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  32103247 aagccaagtgtaattcatgcaccaagctagattttttcatgcaagaattaaaccatgtgtattccatgcaaaaagtcaagtgtaattcatgacaaatcca 32103346  T
Q  197 agtgtctttcatgcaagaagttatgtgcattccatgcaagaagcc 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  32103347 agtgtttttcatgcaagaagttatgtgcattccatgcaagaagcc 32103391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 32103379 - 32103439
Alignment:
Q  70 catgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgcaccgagctag 130  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||    
T  32103379 catgcaagaagccatgtgcattccatgcaagaagccaagtgtaattcatgcaccaagctag 32103439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 32073725 - 32073822
Alignment:
Q  24 catgcaagaagataagtgtcattcgtgcacaaattcaagtgtttttcatgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgca 121  Q
    |||||| ||||  |||||| |||  ||||||||| ||||||||||||||||||||||||| ||||| |||||| || ||||||| |||| ||||||||    
T  32073725 catgcaggaagccaagtgtaattaatgcacaaatccaagtgtttttcatgcaagaagccacgtgcagtccatgcaagaagccaaatgtagttcatgca 32073822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 32103110 - 32103251
Alignment:
Q  101 aagccaagtgtaattcatgcaccgagctagattttttcatgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatg-acgaatccaagt 199  Q
    ||||||||||||||||||||||| ||  |   |||||||||||||||  | ||| |||||||| ||| |||  |||||| |||| || || ||| |||||    
T  32103110 aagccaagtgtaattcatgcaccaagaaaatgtttttcatgcaagaagacgtgtatattccatgcaagaagctaagtgtcattcgtgcaccaattcaagt 32103209  T
Q  200 gtctttcatgcaagaagttatgtgcattccatgcaagaagcc 241  Q
    || ||||||||||||||  |||||||||||||| || |||||    
T  32103210 gtttttcatgcaagaagccatgtgcattccatggaaaaagcc 32103251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 32103306 - 32103392
Alignment:
Q  19 tattccatgcaagaagataagtgtcattcgtgcacaaattcaagtgtttttcatgcaagaagccatgtgcattccatggaaaaagcca 106  Q
    |||||||||||| |||  |||||| |||| || |||||| ||||||||||||||||||||||  |||||||||||||| || ||||||    
T  32103306 tattccatgcaaaaagtcaagtgtaattcatg-acaaatccaagtgtttttcatgcaagaagttatgtgcattccatgcaagaagcca 32103392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 32073766 - 32073875
Alignment:
Q  133 tttttcatgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatgacgaatc-caagtgtctttcatgcaagaagttatgtgcattccat 231  Q
    ||||||||||||||| ||| ||| | ||||| ||| ||| ||| |||| ||||||  ||||  ||||||| ||||||||||||||| |||| |||| |||    
T  32073766 tttttcatgcaagaagccacgtgcagtccatgcaagaagccaaatgtagttcatgcagaatgacaagtgtttttcatgcaagaagtcatgtacatttcat 32073865  T
Q  232 gcaagaagcc 241  Q
    ||||||||||    
T  32073866 gcaagaagcc 32073875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 32086203 - 32086267
Alignment:
Q  59 caagtgtttttcatgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgcacc 123  Q
    |||||||||||||||||||||| ||||| ||||  ||| || ||||||||||| |||||||||||    
T  32086203 caagtgtttttcatgcaagaagtcatgtacattttatgcaagaagccaagtgttattcatgcacc 32086267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 32086214 - 32086298
Alignment:
Q  1 catgcaagaagacgtgtatattccatgcaagaagataagtgtcattcgtgcacaaattcaagtgtttttcatgcaagaagccatg 85  Q
    ||||||||||| | |||| |||  ||||||||||  |||||| |||| ||||| ||||||||||||| ||||||||||| |||||    
T  32086214 catgcaagaagtcatgtacattttatgcaagaagccaagtgttattcatgcaccaattcaagtgtttctcatgcaagaaaccatg 32086298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 32073840 - 32073935
Alignment:
Q  1 catgcaagaagacgtgtatattccatgcaagaagataagtgtcattcgtgcacaaattcaagtgtttttcatgcaagaagccatgtgcattccatg 96  Q
    ||||||||||| | |||| ||| |||||||||||  || | | |||| ||||| ||||||||||||| ||||||||||| ||||| ||||| ||||    
T  32073840 catgcaagaagtcatgtacatttcatgcaagaagccaaattttattcatgcaccaattcaagtgtttctcatgcaagaaaccatgcgcatttcatg 32073935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 32073700 - 32073806
Alignment:
Q  136 ttcatgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatg-acgaatccaagtgtctttcatgcaagaagttatgtgcattccatgca 234  Q
    ||||||||  |||||| |||| || ||| ||  ||| ||||||||||| ||| || ||||||||||| ||||||||||||||  | ||||| ||||||||    
T  32073700 ttcatgcaccaaaccaagtgtttttcatgcaggaagccaagtgtaattaatgcacaaatccaagtgtttttcatgcaagaagccacgtgcagtccatgca 32073799  T
Q  235 agaagcc 241  Q
    |||||||    
T  32073800 agaagcc 32073806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 32073652 - 32073709
Alignment:
Q  66 ttttcatgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgcacc 123  Q
    |||||||||||||||||||||| |||| |||  | || ||||||||||||||||||||    
T  32073652 ttttcatgcaagaagccatgtgtattcaatgccagaatccaagtgtaattcatgcacc 32073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 32086033 - 32086090
Alignment:
Q  66 ttttcatgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgcacc 123  Q
    |||||||||||||||| ||||| |||||||| || || |||||||||||| |||||||    
T  32086033 ttttcatgcaagaagcgatgtgtattccatgcaagaatccaagtgtaattaatgcacc 32086090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 32073829 - 32073893
Alignment:
Q  59 caagtgtttttcatgcaagaagccatgtgcattccatggaaaaagccaagtgtaattcatgcacc 123  Q
    |||||||||||||||||||||| ||||| |||| |||| || ||||||| | | |||||||||||    
T  32073829 caagtgtttttcatgcaagaagtcatgtacatttcatgcaagaagccaaattttattcatgcacc 32073893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 32073652 - 32073735
Alignment:
Q  134 ttttcatgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatg-acgaatccaagtgtctttcatgcaagaag 216  Q
    |||||||||||||| |||||||||||| || | | ||  ||||||||||||||| || || |||||||| ||||||||| ||||    
T  32073652 ttttcatgcaagaagccatgtgtattcaatgccagaatccaagtgtaattcatgcaccaaaccaagtgtttttcatgcaggaag 32073735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 32086033 - 32086116
Alignment:
Q  134 ttttcatgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatg-acgaatccaagtgtctttcatgcaagaag 216  Q
    |||||||||||||| | ||||||||||||| ||| ||  ||||||||||| ||| || || |||||||| ||||||||| ||||    
T  32086033 ttttcatgcaagaagcgatgtgtattccatgcaagaatccaagtgtaattaatgcaccaaaccaagtgtttttcatgcaggaag 32086116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 32103379 - 32103428
Alignment:
Q  138 catgcaagaaaccatgtgtattccattcaaaaagtcaagtgtaattcatg 187  Q
    |||||||||| ||||||| ||||||| ||| ||| |||||||||||||||    
T  32103379 catgcaagaagccatgtgcattccatgcaagaagccaagtgtaattcatg 32103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University