View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18367_high_1 (Length: 827)
Name: NF18367_high_1
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 298 - 608
Target Start/End: Complemental strand, 52035589 - 52035268
Alignment:
| Q |
298 |
aatgaaccactttattctctctgaccaatttcaacataagactgcctcaattcattgttctacc-atgcaattccttggtgcttttgacatggtttttaa |
396 |
Q |
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| T |
52035589 |
aatgaaccactttattgtctctgaccaatttcaacataagactgcctcaattcattgttctacccatgcaattccttggtgcttttgacatggtttttaa |
52035490 |
T |
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| Q |
397 |
cttaaaatcatagataattaaatttaaaatgagagatgaggagagttgcaaatgattagaatataaacggtcacaacaattgagtttgatcattcactaa |
496 |
Q |
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| T |
52035489 |
cttaaaatcatagataattaaatttaaaatgagagatgatgagagttgcaaatgattagaatataaacggtcacaacaattgagtttgatcattcactaa |
52035390 |
T |
|
| Q |
497 |
aataatatttgatcaagttttagtttactttgaactatcatgaccctttaaaagtttccacta----------tatactagtaactaaaattgataagac |
586 |
Q |
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| T |
52035389 |
aataatatttgatcaagttttagtttactttgaactatcatgaccctttaaaagtttccactatatatatatatatactagtaactaaaattgataagac |
52035290 |
T |
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| Q |
587 |
aagaaaatagttcaaataaaca |
608 |
Q |
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| T |
52035289 |
aagaaaataattcaaacaaaca |
52035268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 629 - 809
Target Start/End: Complemental strand, 52035275 - 52035095
Alignment:
| Q |
629 |
aacaaacaacaaaaactttaagcaacttaatttaaaagtagcagaacaagaagtaaataaatgaaatacatgatgagaccatctaaatctaaattataaa |
728 |
Q |
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| T |
52035275 |
aacaaacaacaaaaactttaagcaacttaatttaaaagtagcagaacaagaagtaaataaatgaaatacatgatgagagcatctaaatctaaattataaa |
52035176 |
T |
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| Q |
729 |
aggggactaatggtatcaaaatgtaggacaaccatcagtaattatgcctttagcagtaggacatgtagcaagaggacaatg |
809 |
Q |
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| T |
52035175 |
aggggactaatggtatcaaaatgtaggacaaccatcagtaactatgcctttagcagtaggacatgtagcaagaggacaatg |
52035095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 52035812 - 52035632
Alignment:
| Q |
11 |
tcacagataataagttctctcccgacaatgtatatcatagctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattg |
110 |
Q |
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| T |
52035812 |
tcacagataataagttctctcccgacaatgtatatcatcgctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattg |
52035713 |
T |
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| Q |
111 |
acaaaacgatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttttaaaaa |
191 |
Q |
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| T |
52035712 |
acaaaacgatgcaatgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttgtaaaaa |
52035632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 52035641 - 52035590
Alignment:
| Q |
221 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
272 |
Q |
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| T |
52035641 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
52035590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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