View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18367_high_15 (Length: 236)
Name: NF18367_high_15
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3342803 - 3342584
Alignment:
| Q |
1 |
ataaattatattgagcctcccatagaatgcgttgccaccaaatcacagtaccctttaaactagacaatggattgttttaactagttgagaagcatggtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3342803 |
ataaattatattgagcctcccatagaatgcgttgccaccaaatcaccgtaccctttaaactagacaatggattgttttaactagttgagaagcatggtgt |
3342704 |
T |
|
| Q |
101 |
tcaatgctgcaataacttgattgccacagttgagtcggagtccacatttgctaattttatgttatgaagaattccccaactctccatgcacaaacacgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3342703 |
tcaatgctgcaataacttgattgccacagttgagtcggagtctacatttgctaattttatgttatgaagaattccccaactctccatgcacaaacacgat |
3342604 |
T |
|
| Q |
201 |
ccaatattggacgagaaagt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3342603 |
ccaatattggacgagaaagt |
3342584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University