View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18367_high_3 (Length: 713)
Name: NF18367_high_3
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 4823646 - 4823257
Alignment:
| Q |
17 |
aaaatcagcattcaattgaagcttaaaacattagtttcattgttcattcaatttgtaagccacttccttcatggcttaaaacattacttcttttcttaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4823646 |
aaaatcagcattcaattgaagcttaaaacattagtttcattgttcattcaatttgtaaaccacttccttcatggcttaaaacattacttcttttcttaag |
4823547 |
T |
|
| Q |
117 |
tcaaaatttgaggcttcaagtttgattcaaatgagtctaacttatggaaaatttggaggcaaagaaataaataaagagggtcttggtcaaagaagtattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4823546 |
tcaaaatttgaggcttcaagtttgattcaaatgagtctaacttatggaaaatttggaggcaaagaaataaataaagagggtcttggtcaaaaaagtattt |
4823447 |
T |
|
| Q |
217 |
ggcttatttggataatattcatcacattc----------------ccaagtcaatttacacactaaaactcttcttttggatagatcaacttttgagctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4823446 |
ggcttatttggataatattcatcacattcccaattcatcacattcccaagtcaatttacacactaaaactcttcttttggatagatcaaattttgagctt |
4823347 |
T |
|
| Q |
301 |
atagtg---aataacttgtaacttgtgagtgaatggaaaattgaaggattggatggtatgagatggaatgggttttattgtactacctcc |
387 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4823346 |
atagtgaataataacttgtaacttgtgagtgaatggaaaattgaaggattagatggtatgaggtggaatgggttttattgtactacctcc |
4823257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 384 - 708
Target Start/End: Complemental strand, 4822248 - 4821924
Alignment:
| Q |
384 |
ctccaaagagtgctccggttactttccgctcaatagctgtgcgtgtttatttataatatagttgacctctataagatcaaaagctttcgatgtgggacta |
483 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4822248 |
ctccaaagagtgctccagttactatccgctcaatagctgtgcgtgtttatttataatatagttgacctctataagatcaaaagctttcgatgtgggacta |
4822149 |
T |
|
| Q |
484 |
ccaattgttccgcaaagcacgcattggtgttggatatgtaggttgtgacttgagattgagatgatgcaannnnnnnggggcatgtaaggcagctgcagct |
583 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4822148 |
ccaattgttccgcaaagcacgcataggtgttggatatgtaggttgtgacttgagattgagatgatgcaatttttttggggcatgtaaggcagctgctgct |
4822049 |
T |
|
| Q |
584 |
tttgaaggtggtcctggcaggggcacaagcagctgccgatggcgggggtcgcgacgatggaagtattggataatacaatggtggtgctgattgcaggctg |
683 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4822048 |
tttgaaggtggtcctggaaggggcacaagcagctgccgatggcgggggtcgcgacgatggaagtattggataatacaatggtggtgctgattgcaggctg |
4821949 |
T |
|
| Q |
684 |
caaagcttctttttcttcttctcac |
708 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
4821948 |
caaagcttcattttcttcttatcac |
4821924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 202 - 321
Target Start/End: Complemental strand, 4813621 - 4813502
Alignment:
| Q |
202 |
gtcaaagaagtatttggcttatttggataatattcatcacattcccaagtcaatttacacactaaaactcttcttttggatagatcaacttttgagctta |
301 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4813621 |
gtcaaagaaatacttggcttatttggataatattcatcacattcccatgccaatttacacactaaaactcttcttttggatagatcgacatttgagctta |
4813522 |
T |
|
| Q |
302 |
tagtgaataacttgtaactt |
321 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4813521 |
tagtgaataacttgtaactt |
4813502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 640 - 708
Target Start/End: Complemental strand, 4812010 - 4811942
Alignment:
| Q |
640 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttcttctcac |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4812010 |
atggaagtattggataatacaatggtggtgctgattgcaggctgcaaagcttctttttcttcttatcac |
4811942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 4817357 - 4817263
Alignment:
| Q |
84 |
ttcatggcttaaaacattacttc-ttttcttaagtcaaaatttgaggcttcaagtttgattcaaatgagtctaacttatggaaaatttggaggca |
177 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||| ||||||||||||| | ||||| |||| ||||||||||||| |
|
|
| T |
4817357 |
ttcatggcttaaaacattacttcctttttttaagtcaaaatttgcggcttgaagattgattcaaatgaatgtaactaatgggaaatttggaggca |
4817263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 4843801 - 4843678
Alignment:
| Q |
189 |
aaagagggtcttggtcaaagaagtatttggcttattt-ggataatattcatcacattcccaagtcaatttacacactaaaactcttcttttggatagatc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||| | ||||||||||| || ||||| |||||| | ||| |
|
|
| T |
4843801 |
aaagagggtcttggtcaaagaagtatttaactttttttggataatattcatcacatttccatgacaatttacacatcaagactct--ttttggcaatatc |
4843704 |
T |
|
| Q |
288 |
aacttttgagcttatagtgaataact |
313 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
4843703 |
aacttttgtgcttatagtgaataact |
4843678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 482
Target Start/End: Complemental strand, 4812164 - 4812065
Alignment:
| Q |
384 |
ctccaaagagtgctccggttactttccgctcaatagctgtgcgtgtttatttataatatagttgacctctataaga-tcaaaagctttcgatgtgggact |
482 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||| |||| | ||||||||||||||||||||||||||| |||| |||||||||| | |||||||||| |
|
|
| T |
4812164 |
ctccaaagagtgctccagttacaatcctctcaatagttgtgtgcgtttatttataatatagttgacctctacaagattcaaaagcttccaatgtgggact |
4812065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 4813824 - 4813762
Alignment:
| Q |
115 |
agtcaaaatttgaggcttcaagtttgattcaaatgagtctaacttatggaaaatttggaggca |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
4813824 |
agtcaaaatttgaggcttcaagtttgattcaaatgagtgtaacttatgagaaatttggaggca |
4813762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 4813485 - 4813412
Alignment:
| Q |
309 |
taacttgtaacttgtgagtgaatggaaaattgaaggattggatggtatgagatggaatgggttttattgtacta |
382 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4813485 |
taacttgtaactttggagtggatggaaaattgaaggactggatggtataggatggaatgagttttattgtacta |
4813412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 4817403 - 4817354
Alignment:
| Q |
17 |
aaaatcagcattcaattgaagcttaaaacattagtttcattgttcattca |
66 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
4817403 |
aaaaccagcattcagtcgaagcttaaaacattagtttcattgttcattca |
4817354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 4800595 - 4800531
Alignment:
| Q |
430 |
ttatttataatatagttgacctctataagat-caaaagctttcgatgtgggactaccaattgttc |
493 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | |||||||||| |||||||||||| ||||||||| |
|
|
| T |
4800595 |
ttatttataataaagtttacctctataagtttcaaaagctttggatgtgggactatcaattgttc |
4800531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University