View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18367_low_11 (Length: 260)
Name: NF18367_low_11
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 5415233 - 5414993
Alignment:
| Q |
5 |
atatacatgattgattatgtatatttgcatatttaagccaaagctagcatagaaagtgtgagaaaaacaatggacactacttggattctatttgtgacac |
104 |
Q |
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| T |
5415233 |
atatacatgattgattatgtatatttgcatatttaagccaaagctagcatagaaagtgtgagaaaaacaatggacactacttggattctatttgtgacac |
5415134 |
T |
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| Q |
105 |
caattttcttgtgcactttgatcctctactacagaaacaggcttagtcttaagctcaaaccaaaacaaagaaatcagcttccactaggcactcttggatg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5415133 |
caattttcttgtgcactttgatcctctactacagaaacaggcttagtcttaagctcaaaccaaaacaaagaaatcagcttccactaggcactcttggatg |
5415034 |
T |
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| Q |
205 |
gccttttattggtgaaaccatagattttgtttcttgtgctt |
245 |
Q |
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| T |
5415033 |
gccttttattggtgaaaccatagattttgtttcttgtgctt |
5414993 |
T |
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