View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18367_low_13 (Length: 248)
Name: NF18367_low_13
Description: NF18367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18367_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3342897 - 3343025
Alignment:
| Q |
1 |
gaaatgcacaattgtttcataaaa------aagatgatttatcatgcaagattctcgttattggcatcgttagtctattaattttatgcaaatagataac |
94 |
Q |
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| T |
3342897 |
gaaatgcacaattgtttcataaaaaaaaaaaagatgatttatcatgcaagattctcgttattggcatcgttagtctattaattttatgcaaatagataac |
3342996 |
T |
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| Q |
95 |
gacaagaactatgggattgtttaataggt |
123 |
Q |
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| T |
3342997 |
gacaagaactatgggattgttcaataggt |
3343025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 3343065 - 3343099
Alignment:
| Q |
163 |
tttgcaattgttgttgggatacaacaacaattagc |
197 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
3343065 |
tttgcaattgttgttgggatacaacaacagttagc |
3343099 |
T |
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